# HG changeset patch
# User yhoogstrate
# Date 1415374515 18000
# Node ID 059d62372e388f4604be43cafd4c62f313560926
# Parent  b0b15ff831bfaa9aa214e51dda6ed5c3988e2310
Uploaded

diff -r b0b15ff831bf -r 059d62372e38 tool_dependencies.xml
--- a/tool_dependencies.xml	Fri Nov 07 10:21:45 2014 -0500
+++ b/tool_dependencies.xml	Fri Nov 07 10:35:15 2014 -0500
@@ -1,13 +1,13 @@
 <?xml version="1.0"?>
 <tool_dependency>
 	<package name="pysam" version="0.7.7">
-		<repository changeset_revision="240d1ad9f207" name="package_pysam_0_7_7" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+		<repository changeset_revision="240d1ad9f207" name="package_pysam_0_7_7" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu" />
 	</package>
 	
 	<package name="flaimapper" version="1.1.0">
 		<install version="1.0">
 			<actions>
-				<action type="shell_command">git clone --recursive https://github.com/yhoogstrate/flaimapper.git ; git reset --hard "109a7ee13cfad6eb4746422a5382a928e141d0a1" ; cd flaimapper/src ; python setup.py build </action><!-- 109a7ee13cfad6eb4746422a5382a928e141d0a1 should be the latest 1.1.0 commit -->
+				<action type="shell_command">git clone --recursive https://github.com/yhoogstrate/flaimapper.git ; cd flaimapper ; git reset --hard "109a7ee13cfad6eb4746422a5382a928e141d0a1" ; cd src ; python setup.py build</action><!-- 109a7ee13cfad6eb4746422a5382a928e141d0a1 should be the latest 1.1.0 commit -->
 				<action type="make_directory">$INSTALL_DIR/lib/python</action>
 				<action type="make_directory">$INSTALL_DIR/lib64/python</action>
 				<action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python &amp;&amp; python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action>