Mercurial > repos > yhoogstrate > flaimapper

comparison tool_dependencies.xml @ 8:c5df479c423b draft

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Uploaded
author yhoogstrate
date Thu, 19 Mar 2015 10:17:46 -0400
parents 548e7c482077
children ebee07644459
comparison
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7:548e7c482077 8:c5df479c423b
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="pysam" version="0.7.7"> 3 <package name="pysam" version="0.7.7">
4 <repository changeset_revision="240d1ad9f207" name="package_pysam_0_7_7" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="ca10c522f37e" name="package_pysam_0_7_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 6
7 <package name="flaimapper" version="1.1.0"> 7 <package name="pysam" version="0.8.1">
8 <repository changeset_revision="6b6843e15541" name="package_pysam_0_8_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
9 </package>
10
11 <package name="flaimapper" version="1.1.2">
8 <install version="1.0"> 12 <install version="1.0">
9 <actions> 13 <actions>
10 <action type="shell_command">git clone --quiet --recursive https://github.com/yhoogstrate/flaimapper.git ; cd flaimapper ; git reset --hard "109a7ee13cfad6eb4746422a5382a928e141d0a1" ; cd src ; python setup.py build</action><!-- 109a7ee13cfad6eb4746422a5382a928e141d0a1 should be the latest 1.1.0 commit --> 14
11 <action type="make_directory">$INSTALL_DIR/lib/python</action> 15 <action type="set_environment_for_install">
12 <action type="make_directory">$INSTALL_DIR/lib64/python</action> 16 <repository changeset_revision="ca10c522f37e" name="package_pysam_0_7_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
13 <action type="shell_command">cd src ; pwd ; ls ; export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python &amp;&amp; python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action> 17 <package name="pysam" version="0.7.7" />
18 </repository>
19 <repository changeset_revision="6b6843e15541" name="package_pysam_0_8_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
20 <package name="pysam" version="0.8.1" />
21 </repository>
22 </action>
23
24 <action type="make_directory">$INSTALL_DIR</action>
25 <action type="make_directory">$INSTALL_DIR/bin</action>
26
27 <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR:$INSTALL_DIR"/lib/python":$INSTALL_DIR"/lib64/python":$PYSAM_PATH:$PYSAM_PATH"/lib/python":$PYSAM_PATH"/lib64/python" ; easy_install --prefix=$INSTALL_DIR --install-dir=$INSTALL_DIR --script-dir=$INSTALL_DIR/bin $REPOSITORY_INSTALL_DIR"/egg/flaimapper-1.1.2-py2.7.egg"</action>
14 28
15 <action type="set_environment"> 29 <action type="set_environment">
16 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python</environment_variable> 30 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python</environment_variable>
17 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> 31 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
18 </action> 32 </action>
19 </actions> 33 </actions>
20 </install> 34 </install>
21 </package> 35 </package>