Mercurial > repos > yhoogstrate > flaimapper

comparison flaimapper.xml @ 3:83bf9e65cc10 draft

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Uploaded
author yhoogstrate
date Fri, 07 Nov 2014 10:20:46 -0500
parents 83c9552188d1
children b0b15ff831bf
comparison
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2:83c9552188d1 3:83bf9e65cc10
17 -r $fasta 17 -r $fasta
18 #for $alignment in $alignments 18 #for $alignment in $alignments
19 $alignment 19 $alignment
20 #end for 20 #end for
21 </command> 21 </command>
22
23 <version_command>flaimapper --version</version_command>
22 24
23 <inputs> 25 <inputs>
24 <param name="alignments" type="data" format="bam,sam" label="Alignment file(s)" help="The input alignment file(s) where the gene expression has to be counted. The file can have a SAM or BAM format; but ALL files in the series must be in THE SAME format." multiple="true" /> 26 <param name="alignments" type="data" format="bam,sam" label="Alignment file(s)" help="The input alignment file(s) where the gene expression has to be counted. The file can have a SAM or BAM format; but ALL files in the series must be in THE SAME format." multiple="true" />
25 27
26 <param name="mask" type="data" format="gtf,gff,gtf3" label="small ncRNA Annotation (gtf)" help="" /> 28 <param name="mask" type="data" format="gtf,gff,gtf3" label="small ncRNA Annotation (gtf)" help="" />