comparison tool_dependencies.xml @ 16:71b580f3a3e8 draft

Uploaded
author yhoogstrate
date Fri, 20 Mar 2015 06:04:09 -0400
parents 5e677aafc3a1
children 0e9520cf7587
comparison
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15:ae3e699a4ae5 16:71b580f3a3e8
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <!-- 3 <package name="pysam" version="0.8.2.1">
4 Because I accidentally included too much large files within the 4 <repository changeset_revision="e6c1f548397a" name="package_pysam_0_8_2" owner="yhoogstrate" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 GitHub repository of FlaiMapper it is not convenient to use git
6 to pull the latest code from. Downloading simply takes way to
7 long and the package size is unnecessairy large.
8
9 Instead, I have created an egg that can be installed using
10 easy_install.
11 -->
12
13 <package name="pysam" version="0.8.1">
14 <repository changeset_revision="6b6843e15541" name="package_pysam_0_8_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
15 </package> 5 </package>
16 6
17 <package name="flaimapper" version="1.1.2"> 7 <package name="flaimapper" version="1.1.2">
18 <install version="1.0"> 8 <install version="1.0">
19 <actions> 9 <actions>
20 10
21 <action type="set_environment_for_install"> 11 <action type="set_environment_for_install">
22 <repository changeset_revision="6b6843e15541" name="package_pysam_0_8_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 12 <repository changeset_revision="e6c1f548397a" name="package_pysam_0_8_2" owner="yhoogstrate" toolshed="https://testtoolshed.g2.bx.psu.edu">
23 <package name="pysam" version="0.8.1" /> 13 <package name="pysam" version="0.8.2.1" />
24 </repository> 14 </repository>
25 </action> 15 </action>
26 16
27 <action type="make_directory">$INSTALL_DIR</action> 17 <action type="make_directory">$INSTALL_DIR</action>
28 <action type="make_directory">$INSTALL_DIR/bin</action> 18 <action type="make_directory">$INSTALL_DIR/bin</action>
33 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python</environment_variable> 23 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python</environment_variable>
34 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> 24 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
35 </action> 25 </action>
36 </actions> 26 </actions>
37 </install> 27 </install>
28
29 <readme>
30 Because I accidentally included too much large files within the
31 GitHub repository of FlaiMapper it is not convenient to use git
32 to pull the latest code from. Downloading simply takes way to
33 long and the package size is unnecessairy large.
34
35 Instead, I have created an egg that can be installed using
36 easy_install.
37 </readme>
38 </package> 38 </package>
39 </tool_dependency> 39 </tool_dependency>