Mercurial > repos > yhoogstrate > flaimapper

comparison tool_dependencies.xml @ 28:19d1402611ef draft

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planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/flaimapper commit 0eac9a776e7bc33275b8ef5e76a4f17b7b5c1259-dirty
author yhoogstrate
date Wed, 03 Jun 2015 07:27:47 -0400
parents ab3ea877607f
children ecb39f642616
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27:19feb87f757d 28:19d1402611ef
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="pysam" version="0.8.2.1"> 3 <package name="flaimapper" version="1.2.1">
4 <repository changeset_revision="e6c1f548397a" name="package_pysam_0_8_2" owner="yhoogstrate" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="ed2ecda4847d" name="package_flaimapper_1_2_1" owner="yhoogstrate" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 </package>
6
7 <package name="flaimapper" version="1.1.5">
8 <install version="1.0">
9 <actions>
10
11 <action type="set_environment_for_install">
12 <repository changeset_revision="e6c1f548397a" name="package_pysam_0_8_2" owner="yhoogstrate" toolshed="https://testtoolshed.g2.bx.psu.edu">
13 <package name="pysam" version="0.8.2.1" />
14 </repository>
15 </action>
16
17 <action type="make_directory">$INSTALL_DIR</action>
18 <action type="make_directory">$INSTALL_DIR/bin</action>
19
20 <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR:$INSTALL_DIR"/lib/python":$INSTALL_DIR"/lib64/python":$PYSAM_PATH:$PYSAM_PATH"/lib/python":$PYSAM_PATH"/lib64/python" ; easy_install --prefix=$INSTALL_DIR --install-dir=$INSTALL_DIR --script-dir=$INSTALL_DIR/bin $REPOSITORY_INSTALL_DIR"/egg/flaimapper-1.1.5-py2.7.egg"</action>
21
22 <action type="set_environment">
23 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python</environment_variable>
24 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
25 </action>
26 </actions>
27 </install>
28
29 <readme>
30 Because I accidentally included too much large files within the
31 GitHub repository of FlaiMapper it is not convenient to use git
32 to pull the latest code from. Downloading simply takes way to
33 long and the package size is unnecessairy large.
34
35 Instead, I have created an egg that can be installed using
36 easy_install.
37 </readme>
38 </package> 5 </package>
39 </tool_dependency> 6 </tool_dependency>