Mercurial > repos > yhoogstrate > featurecounts
view tool_dependencies.xml @ 1:9fcffbe6c206 draft
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author | yhoogstrate |
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date | Tue, 20 May 2014 08:54:56 -0400 |
parents | cada2d2f0a7c |
children | fae19d64e9de |
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<?xml version="1.0"?> <tool_dependency> <package name="featurecounts" version="1.4.4"> <install version="1.0"> <actions> <action type="shell_command">wget http://sourceforge.net/projects/subread/files/subread-1.4.4/subread-1.4.4-source.tar.gz && tar -zxvf subread-1.4.4-source.tar.gz && cd subread-1.4.4-source/src/ && make -f Makefile.Linux && cd ../../</action> <action type="move_file"> <source>../subread-1.4.4-source/bin/featureCounts</source> <destination>$INSTALL_DIR/bin</destination> </action> <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> <environment_variable name="PATH" action="prepend_to">$REPOSITORY_INSTALL_DIR</environment_variable> </action> </actions> </install> <readme> Downloads and installs featureCounts; requires WGET, GNU AUTOTOOLS and TAR to be installed! </readme> </package> <package name="featurecounts2bed" version="1.0.0"> <install version="1.0"> <actions> <action type="shell_command">wget http://testtoolshed.g2.bx.psu.edu/repos/yhoogstrate/featurecounts/raw-file/tip/featurecounts2bed.sh && chmod 755 *.sh</action> <action type="move_file"> <source>../featurecounts2bed.sh</source> <destination>$INSTALL_DIR/bin</destination> </action> <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> <environment_variable name="PATH" action="prepend_to">$REPOSITORY_INSTALL_DIR</environment_variable> </action> </actions> </install> </package> </tool_dependency>