Mercurial > repos > yhoogstrate > featurecounts
diff featurecounts.xml @ 6:fae19d64e9de draft
Uploaded
| author | yhoogstrate |
|---|---|
| date | Thu, 13 Nov 2014 09:46:22 -0500 |
| parents | 31279ea9fbfa |
| children | 2312bedfe2a3 |
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--- a/featurecounts.xml Wed May 21 08:27:05 2014 -0400 +++ b/featurecounts.xml Thu Nov 13 09:46:22 2014 -0500 @@ -1,10 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="featurecounts" name="featureCounts"> +<tool id="featurecounts" name="featureCounts" version="1.4.4.a"> <description>Measure gene expression in RNA-Seq experiments from SAM or BAM files.</description> <requirements> <requirement type="package" version="1.4.4">featurecounts</requirement> <requirement type="package" version="1.0.0">featurecounts2bed</requirement> </requirements> + <version_command>featureCounts -v</version_command> <command> <!-- The following script is written in the "Cheetah" language: @@ -226,7 +227,7 @@ **featureCounts: an efficient general purpose program for assigning sequence reads to genomic features.** -*Liao Y1, Smyth GK, Shi W.* Bioinformatics. 2014 Apr 1;30(7):923-30. +*Liao Y1, Smyth GK, Shi W.* - Bioinformatics. 2014 Apr 1;30(7):923-30. - http://www.ncbi.nlm.nih.gov/pubmed/24227677 - http://dx.doi.org/10.1093/bioinformatics/btt656 @@ -242,13 +243,15 @@ Contact ------- -The tool wrapper has been written by Youri Hoogstrate from the Erasmus Medical Center (Rotterdam, Netherlands) on behalf of the Translational Research IT (TraIT) project: +The tool wrapper has been written by Youri Hoogstrate from the Erasmus +Medical Center (Rotterdam, Netherlands) on behalf of the Translational +Research IT (TraIT) project: http://www.ctmm.nl/en/programmas/infrastructuren/traitprojecttranslationeleresearch -I want to thank the Marius van den Beek for his contribution to this wrapper. - -More tools by the Translational Research IT (TraIT) project can be found in the following repository: -http://testtoolshed.g2.bx.psu.edu/ - +More tools by the Translational Research IT (TraIT) project can be found +in the following toolsheds: +- http://toolshed.dtls.nl/ +- http://toolshed.g2.bx.psu.edu +- http://testtoolshed.g2.bx.psu.edu/ </help> -</tool> \ No newline at end of file +</tool>