diff featurecounts.xml @ 9:c74b27b17d73 draft

Added test-case

--- a/featurecounts.xml	Thu Mar 19 08:08:16 2015 -0400
+++ b/featurecounts.xml	Thu Mar 19 11:58:14 2015 -0400
@@ -123,7 +123,7 @@
 				</param>
 			</when>
 			<when value="history">
-				<param name="reference_gene_sets" format="gff" type="data" label="Gene annotation file" help="The program assumes that the provided annotation file is in GTF format. Make sure that the gene annotaiton file corresponds to the same reference genome as used for the alignment." />
+				<param name="reference_gene_sets" format="gff" type="data" label="Gene annotation file" help="The program assumes that the provided annotation file is in GTF format. Make sure that the gene annotation file corresponds to the same reference genome as used for the alignment." />
 			</when>
 			<when value="indexed_all">
 				<param name="reference_gene_sets" type="select" label="Reference Gene Sets used during alignment (GFF/GTF)" >
@@ -198,6 +198,11 @@
         
         <tests>
 	    <test>
+                <param name="alignments" value="featureCounts_input1.bam,featureCounts_input2.bam" ftype="bam" />
+                <param name="source_select" value="history" />
+                <param name="reference_gene_sets" value="featureCounts_guide.gff" ftype="gff" />
+                <output name="output" file="output.tab"/>
+                <output name="output_summary" file="output_summary.tab"/>
             </test>
         </tests>
 	<help>