comparison featurecounts.xml @ 1:9fcffbe6c206 draft

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0:cada2d2f0a7c

					#else
						; sed -e '1,2 s/$alignment_escaped/${alignment_name_escaped}/g' $output > tmp.txt
					#end if
					
					; mv tmp.txt $output
				#end for
			#end if
		#end if
	</command>
	
	<inputs>

		</conditional>
	</inputs>
	
	<outputs>
		<data format="tabular" name="output" label="${tool.name} on ${', '.join([ str(a.hid)+': '+a.name for a in $alignments ])}" />
	</outputs>
	
	<help>
featureCounts::
**Overview**

1:9fcffbe6c206

					#else
						; sed -e '1,2 s/$alignment_escaped/${alignment_name_escaped}/g' $output > tmp.txt
					#end if
					
					; mv tmp.txt $output
					
					sed -e '1 s/$alignment_escaped/${alignment_name_escaped}/g' $output".summary" > tmp.txt
					; mv tmp.txt $output".summary"
				#end for
				; mv $output".summary" $output_summary
			#end if
		#end if
	</command>
	
	<inputs>

		</conditional>
	</inputs>
	
	<outputs>
		<data format="tabular" name="output" label="${tool.name} on ${', '.join([ str(a.hid)+': '+a.name for a in $alignments ])}" />
		<data format="text" name="output_summary" label="${tool.name} on ${', '.join([ str(a.hid)+': '+a.name for a in $alignments ])} summary" />
	</outputs>
	
	<help>
featureCounts::
**Overview**