Mercurial > repos > yhoogstrate > ega_download_streamer
changeset 4:887159f23385 draft
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/ega_client_galaxy_wrapper commit 63cc1d3eba84a01ae7e9da734ed91f5b531e4a91-dirty
| author | yhoogstrate |
|---|---|
| date | Tue, 29 Mar 2016 06:02:22 -0400 |
| parents | 8613d02e64d3 |
| children | 8af9d199e410 |
| files | ega_download_streamer.xml |
| diffstat | 1 files changed, 15 insertions(+), 2 deletions(-) [+] |
line wrap: on
line diff
--- a/ega_download_streamer.xml Tue Mar 29 05:42:00 2016 -0400 +++ b/ega_download_streamer.xml Tue Mar 29 06:02:22 2016 -0400 @@ -29,20 +29,33 @@ -re "$encryption_key" -label "${random_request_uid}" | grep -v "Login failed" && - echo "\n\n\nDownloading request" && + echo "" && + echo "" && + echo "" && + echo "Downloading request" && java -jar "\$JAVA_JAR_PATH/EgaDemoClient.jar" -pf "credentials.txt" -dr "${random_request_uid}" -nt 7 > download.log && + echo "" && + echo "" && + echo "" && + echo "------------------:" && + ls -alsh && + echo "---download.log---:" && cat download.log && + echo "------------------:" && ## Commands below may fail if authentication was not a success ENCRYPTED_FILES_NAME=\$(grep -oE "Completed Download Target:[ ]+(.*?)\.cip" download.log | sed -r "s/^Completed Download Target:[ ]+//" ) && DECRYPTED_FILES_NAME=\${ENCRYPTED_FILES_NAME%.cip} && - echo "\n\n\n Decrpyting \$ENCRYPTED_FILES_NAME to \$DECRYPTED_FILES_NAME" && + echo "" && + echo "" && + echo "" && + echo "Decrpyting \$ENCRYPTED_FILES_NAME to \$DECRYPTED_FILES_NAME" && java -jar "\$JAVA_JAR_PATH/EgaDemoClient.jar" -pf credentials.txt