Mercurial > repos > yhoogstrate > ega_download_streamer
changeset 8:258bef815327 draft
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/ega_client_galaxy_wrapper commit 63cc1d3eba84a01ae7e9da734ed91f5b531e4a91-dirty
| author | yhoogstrate |
|---|---|
| date | Tue, 29 Mar 2016 07:41:51 -0400 |
| parents | a727830ece13 |
| children | 6d0453b21b1c |
| files | ega_download_streamer.xml |
| diffstat | 1 files changed, 14 insertions(+), 6 deletions(-) [+] |
line wrap: on
line diff
--- a/ega_download_streamer.xml Tue Mar 29 07:27:23 2016 -0400 +++ b/ega_download_streamer.xml Tue Mar 29 07:41:51 2016 -0400 @@ -21,7 +21,7 @@ echo \$user > credentials.txt && echo \$pass >> credentials.txt && - echo "Creating an encryption request at server" && + echo "Creating an encryption request at server:" && if java -jar "\$JAVA_JAR_PATH/EgaDemoClient.jar" @@ -34,7 +34,7 @@ echo "" && echo "" && echo "" && - echo "Downloading request" && + echo "Downloading request:" && if java -jar "\$JAVA_JAR_PATH/EgaDemoClient.jar" @@ -51,23 +51,31 @@ echo "" && echo "" && echo "" && - echo "Decrpyting \$ENCRYPTED_FILES_NAME to \$DECRYPTED_FILES_NAME" && + echo "Decrpyting \$ENCRYPTED_FILES_NAME to \$DECRYPTED_FILES_NAME:" && if java -jar "\$JAVA_JAR_PATH/EgaDemoClient.jar" -pf credentials.txt -dc "\$ENCRYPTED_FILES_NAME" - -dck "$encryption_key" ; then + -dck "$encryption_key" > decrypt.log ; then + + cat decrypt.log && if file --mime-type "\$DECRYPTED_FILES_NAME" | grep -q /gzip\$; then - echo "Unpacking as well" && + + echo "" && + echo "" && + echo "" && + echo "Unpacking because it is an archive" && gunzip -cf "\$DECRYPTED_FILES_NAME" > "$output" ; + else mv "\$DECRYPTED_FILES_NAME" "$output" ; fi ; else echo "Error: decrypting failed:" 1>&2 && + cat decrypt.log && exit 1 ; fi ; @@ -78,8 +86,8 @@ fi ; else + echo "Error: making the request failed" 1>&2 && cat request.log && - echo "Error: making the request failed" 1>&2 && exit 1 ; fi &&