Mercurial > repos > yhoogstrate > ega_download_streamer
comparison ega_download_streamer.xml @ 5:8af9d199e410 draft
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/ega_client_galaxy_wrapper commit 63cc1d3eba84a01ae7e9da734ed91f5b531e4a91-dirty
| author | yhoogstrate |
|---|---|
| date | Tue, 29 Mar 2016 06:56:26 -0400 |
| parents | 887159f23385 |
| children | 4be485e48065 |
comparison
equal
deleted
inserted
replaced
| 4:887159f23385 | 5:8af9d199e410 |
|---|---|
| 35 echo "Downloading request" && | 35 echo "Downloading request" && |
| 36 java -jar | 36 java -jar |
| 37 "\$JAVA_JAR_PATH/EgaDemoClient.jar" | 37 "\$JAVA_JAR_PATH/EgaDemoClient.jar" |
| 38 -pf "credentials.txt" | 38 -pf "credentials.txt" |
| 39 -dr "${random_request_uid}" | 39 -dr "${random_request_uid}" |
| 40 -nt 7 > download.log && | 40 -nt 7 > download.log ; |
| 41 | 41 |
| 42 echo "" && | |
| 43 echo "" && | |
| 44 echo "" && | |
| 45 echo "------------------:" && | |
| 46 ls -alsh && | |
| 47 echo "---download.log---:" && | |
| 48 cat download.log && | 42 cat download.log && |
| 49 echo "------------------:" && | |
| 50 | 43 |
| 51 ## Commands below may fail if authentication was not a success | 44 ## Commands below may fail if authentication was not a success |
| 52 ENCRYPTED_FILES_NAME=\$(grep -oE "Completed Download Target:[ ]+(.*?)\.cip" download.log | sed -r "s/^Completed Download Target:[ ]+//" ) && | 45 ENCRYPTED_FILES_NAME=\$(grep -oE "Completed Download Target:[ ]+(.*?)\.cip" download.log | sed -r "s/^Completed Download Target:[ ]+//" ) && |
| 53 DECRYPTED_FILES_NAME=\${ENCRYPTED_FILES_NAME%.cip} && | 46 DECRYPTED_FILES_NAME=\${ENCRYPTED_FILES_NAME%.cip} && |
| 54 | 47 |