Mercurial > repos > yhoogstrate > edger_with_design_matrix

changeset 22:d86d9d498dc7 draft

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Uploaded
author yhoogstrate
date Thu, 09 Jan 2014 11:06:32 -0500
parents ad5d660ae693
children fa476f8e1f9e
files edgeR_DGE.xml
diffstat 1 files changed, 4 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/edgeR_DGE.xml	Thu Jan 09 10:01:11 2014 -0500
+++ b/edgeR_DGE.xml	Thu Jan 09 11:06:32 2014 -0500
@@ -2,7 +2,7 @@
 <tool id="edger_dge" name="edgeR Differential GeneExpression Analysis">
 	<description>RNA-Seq expression analysis using edgeR (R package)</description>
 	
-	<command interpreter="bash">
+	<command>
 		<!--
 			The following script is written in the "Cheetah" language:
 			http://www.cheetahtemplate.org/docs/users_guide_html_multipage/contents.html
@@ -23,7 +23,9 @@
 			$output_MAplot
 			smearPlot '
 			> $output_R
-			2> >(grep -v 'Calculating library sizes' 1>&2)
+			2> stderr.txt ;
+			grep -v 'Calculating library sizes from column' stderr.txt 1>&2
+	
 	</command>
 	
 	<inputs>