Mercurial > repos > yhoogstrate > edger_with_design_matrix

changeset 39:1b8ecb48f6e7 draft

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Uploaded
author yhoogstrate
date Thu, 22 May 2014 10:16:58 -0400
parents 47eadcd9e4b8
children d9c9caf4e182
files edgeR_Differential_Gene_Expression.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/edgeR_Differential_Gene_Expression.xml	Thu May 22 10:14:59 2014 -0400
+++ b/edgeR_Differential_Gene_Expression.xml	Thu May 22 10:16:58 2014 -0400
@@ -280,7 +280,7 @@
     
     if(output_heatmap_plot != "/dev/null") {
       pdf(output_heatmap_plot)
-      etable2 <- topTags(lrt, n=100)$table
+      etable2 <- topTags(lrt, n=100)\$table
       order <- rownames(etable2)
       cpm_sub <- cpm(dge,normalized.lib.sizes=TRUE,log=TRUE)[as.numeric(order),]
       heatmap(t(cpm_sub))