Mercurial > repos > yhoogstrate > edger_with_design_matrix
changeset 18:199695284f80 draft
Uploaded
| author | yhoogstrate |
|---|---|
| date | Thu, 09 Jan 2014 09:45:17 -0500 |
| parents | 8a9649241964 |
| children | 9c0a34f7dfae |
| files | edgeR_DGE.xml |
| diffstat | 1 files changed, 6 insertions(+), 6 deletions(-) [+] |
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--- a/edgeR_DGE.xml Thu Jan 09 09:35:19 2014 -0500 +++ b/edgeR_DGE.xml Thu Jan 09 09:45:17 2014 -0500 @@ -22,8 +22,8 @@ $output_BCVplot $output_MAplot smearPlot ' - > $output_R - 2> >(grep -v 'Calculating' | grep -v 'library' | grep -v 'sizes' 1>&2) + > $output_R + 2> >(grep -v Calculating \| grep -v \| grep -v sizes 1>&2 ) </command> <inputs> @@ -32,13 +32,13 @@ <param name="contrast" type="text" label="Contrast (biological question)" help="e.g. 'tumor-normal' or '(G1+G2)/2-G3' using the factors chosen in the design matrix. Read the 'makeContrasts' manual from Limma package for more info." /> <param name="qc" type="select" label="Quality control reports"> - <option value="true">Yes</option> - <option value="false" selected="true">No</option> + <option value="true" selected="true">Yes</option> + <option value="false">No</option> </param> <param name="debug" type="select" label="R Debug output"> - <option value="true" selected="true"> Yes</option> - <option value="false">No</option> + <option value="true"> Yes</option> + <option value="false" selected="true">No</option> </param> </inputs>