Mercurial > repos > yhoogstrate > edger_with_design_matrix

changeset 41:0bbf79213970 draft

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Uploaded
author yhoogstrate
date Thu, 22 May 2014 10:36:11 -0400
parents d9c9caf4e182
children af6e8c45d142
files edgeR_Differential_Gene_Expression.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/edgeR_Differential_Gene_Expression.xml	Thu May 22 10:27:38 2014 -0400
+++ b/edgeR_Differential_Gene_Expression.xml	Thu May 22 10:36:11 2014 -0400
@@ -280,7 +280,7 @@
   }
   
   if(output_heatmap_plot != "/dev/null") {
-    pdf(output_heatmap_plot)
+    pdf(output_heatmap_plot,width=8.5)
     etable2 <- topTags(lrt, n=100)\$table
     order <- rownames(etable2)
     cpm_sub <- cpm(dge,normalized.lib.sizes=TRUE,log=TRUE)[as.numeric(order),]