# HG changeset patch
# User yhoogstrate
# Date 1389253447 18000
# Node ID d7087cb22de96bf8e9c64c4e2c440ed35e0729ed
# Parent  d468482eb2060f32497891b88a0538b45002e76c
Uploaded

diff -r d468482eb206 -r d7087cb22de9 edgeR_Design_Matrix.listing.py
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/edgeR_Design_Matrix.listing.py	Thu Jan 09 02:44:07 2014 -0500
@@ -0,0 +1,26 @@
+
+def listfiles(unpaired_samples,paired_samples):
+	file_list = []
+	
+	if(unpaired_samples != None):
+		if(type(unpaired_samples) == type([])):
+			for sample in unpaired_samples:
+				file_list.append([sample.name,sample.file_name,False])
+		
+		## The following takes care of a bug in galaxy;
+		## if only one history object is selected, it isn't returned as a list but as single object.
+		## This is probably a rudimentair part of code that originates from the time that multiple data-objects were not implemented.
+		
+		else:
+			file_list.append([unpaired_samples.name,unpaired_samples.file_name,False])
+	
+	if(paired_samples != None):
+		pair_id = 0
+		for pair in paired_samples:
+			pair_id += 1
+			sample_id = 0
+			for sample in pair['samples']:
+				sample_id += 1
+				file_list.append([sample['sample'].name+" *[Pair "+str(pair_id)+"; sample "+str(sample_id)+"]",sample['sample'].file_name,False])
+	
+	return file_list