# HG changeset patch
# User yhoogstrate
# Date 1389268097 18000
# Node ID b8b3d63b60abbccad6d8cd5beac0ba76c49ddc42
# Parent  a6ce4b7710d8b521ba3e377b782de571eda8fc5f
Uploaded

diff -r a6ce4b7710d8 -r b8b3d63b60ab edgeR_DGE.xml
--- a/edgeR_DGE.xml	Thu Jan 09 05:42:44 2014 -0500
+++ b/edgeR_DGE.xml	Thu Jan 09 06:48:17 2014 -0500
@@ -72,7 +72,11 @@
 for(i in 2:length(raw_data[,1])) {
   print("parsing counts from:")
   print(raw_data[i,1])
-  read_counts = cbind(read_counts,read.delim(as.character(raw_data[i,1]),header=F,stringsAsFactors=F,row.names=1))
+  
+  header = read.delim(as.character(raw_data[i,1]),header=F,stringsAsFactors=F,row.names=1,nrows=1)
+  has_header = (class(header[1,1]) == "character")
+  
+  read_counts = cbind(read_counts,read.delim(as.character(raw_data[i,1]),header=has_header,stringsAsFactors=F,row.names=1))
   print(i)
 }