Mercurial > repos > yhoogstrate > edger_with_design_matrix

diff tool_dependencies.xml @ 66:c8f607e8bd7b draft

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Uploaded
author yhoogstrate
date Tue, 30 Sep 2014 09:08:16 -0400
parents 8a4febbc60b7
children 718bb1dd0b8a
line wrap: on
line diff
--- a/tool_dependencies.xml	Tue Sep 30 07:21:20 2014 -0400
+++ b/tool_dependencies.xml	Tue Sep 30 09:08:16 2014 -0400
@@ -7,9 +7,15 @@
 	</package>
 	-->
 	
+	<!-- the following repo does NOT even install due to gfortran shared libs:
 	<package name="R" version="3.1.0">
 		<repository changeset_revision="a6cc7706ea14" name="package_r_3_1_0" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
 	</package>
+	-->
+	
+	<package name="R" version="3.0.3">
+		<repository changeset_revision="f386d7431fe0" name="package_r_3_0_3" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
+	</package>
 	
 	<package name="package_biocLite_edgeR_limma" version="latest">
 		<install version="1.0"> 
@@ -20,9 +26,16 @@
 						<package name="package_r3_withx" version="3.0.1" />
 					</repository>
 					-->
+					<!-- the following repo does NOT even install due to gfortran shared libs:
 					<repository changeset_revision="a6cc7706ea14" name="package_r_3_1_0" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu/">
 						<package name="R" version="3.1.0" />
 					</repository>
+					-->
+					
+					<repository changeset_revision="f386d7431fe0" name="package_r_3_0_3" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu/">
+						<package name="R" version="3.0.3" />
+					</repository>
+					
 				</action>
 				<action type="make_directory">$INSTALL_DIR</action>
 				<action type="shell_command">echo "source('http://bioconductor.org/biocLite.R')" &gt; $INSTALL_DIR/runme.R</action>
@@ -35,7 +48,7 @@
 			</actions>
 		</install>
 		<readme>
-			Installs the latest bioc packages edgeR &amp; Limma
+			Installs the latest bioc packages: edgeR &amp; Limma
 	   </readme>
 	</package>