diff edgeR_Design_from_Expression_Matrix.xml @ 79:c86f1f86b3c1 draft

Uploaded

--- a/edgeR_Design_from_Expression_Matrix.xml	Tue Sep 30 11:29:52 2014 -0400
+++ b/edgeR_Design_from_Expression_Matrix.xml	Thu Nov 13 10:30:43 2014 -0500
@@ -1,9 +1,13 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<tool id="design_from_expression_matrix" name="edgeR: Design- from Expression matrix">
+<tool id="design_from_expression_matrix" name="edgeR: Design- from Expression matrix" version="1.0.0.a">
 	<description>Create design- from an expression matrix</description>
 	
+	<requirements>
+		<requirement type="package" version="1.0.0">design_matrix_creator</requirement>
+	</requirements>
+	
 	<command interpreter="python">
-		design_matrix_creator.py
+		design_matrix_creator
 			-c $expression_matrix
 			
 			#set $unique_columns = []
@@ -86,10 +90,34 @@
 	
 	<help>
 edgeR: Design- from Expression matrix
+#####################################
+
+Overview
+--------
+
+Create a design matrix by selecting the desired patients from an
+expression matrix.
+
+Input
+-----
 
 **References**
 
 The test data is coming from:  doi: 10.1093/bioinformatics/btt688.
 http://www.ncbi.nlm.nih.gov/pubmed/24319002
+
+Contact
+-------
+
+The tool wrapper has been written by Youri Hoogstrate from the Erasmus
+Medical Center (Rotterdam, Netherlands) on behalf of the Translational
+Research IT (TraIT) project:
+http://www.ctmm.nl/en/programmas/infrastructuren/traitprojecttranslationeleresearch
+
+More tools by the Translational Research IT (TraIT) project can be found
+in the following toolsheds:
+- http://toolshed.dtls.nl/
+- http://toolshed.g2.bx.psu.edu
+- http://testtoolshed.g2.bx.psu.edu/
 	</help>
 </tool>