Mercurial > repos > yhoogstrate > edger_with_design_matrix
diff edgeR_DGE.xml @ 11:b8b3d63b60ab draft
Uploaded
author | yhoogstrate |
---|---|
date | Thu, 09 Jan 2014 06:48:17 -0500 |
parents | 61e42740b13a |
children | c672e76503b2 |
line wrap: on
line diff
--- a/edgeR_DGE.xml Thu Jan 09 05:42:44 2014 -0500 +++ b/edgeR_DGE.xml Thu Jan 09 06:48:17 2014 -0500 @@ -72,7 +72,11 @@ for(i in 2:length(raw_data[,1])) { print("parsing counts from:") print(raw_data[i,1]) - read_counts = cbind(read_counts,read.delim(as.character(raw_data[i,1]),header=F,stringsAsFactors=F,row.names=1)) + + header = read.delim(as.character(raw_data[i,1]),header=F,stringsAsFactors=F,row.names=1,nrows=1) + has_header = (class(header[1,1]) == "character") + + read_counts = cbind(read_counts,read.delim(as.character(raw_data[i,1]),header=has_header,stringsAsFactors=F,row.names=1)) print(i) }