Mercurial > repos > yhoogstrate > edger_with_design_matrix

diff tool_dependencies.xml @ 96:aef2ea94533b draft

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planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/edger_with_design_matrix commit 73d87531bc80b0a4e688001cd5f8ab1df9526c08-dirty
author yhoogstrate
date Wed, 27 May 2015 09:00:14 -0400
parents 86c3aaa205b5
children b26040bb6301
line wrap: on
line diff
--- a/tool_dependencies.xml	Sun Mar 29 02:41:02 2015 -0400
+++ b/tool_dependencies.xml	Wed May 27 09:00:14 2015 -0400
@@ -4,15 +4,16 @@
 		<repository changeset_revision="e509651776fa" name="package_r_3_0_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
 	</package>
 	
-	<package name="biocLite_edgeR_limma" version="latest">
+	<package name="package_biocLite_edgeR_limma_latest" version="latest">
 		<install version="1.0"> 
 			<actions>
+				
 				<action type="set_environment_for_install">
 					<repository changeset_revision="e509651776fa" name="package_r_3_0_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
 						<package name="R" version="3.0.3" />
 					</repository>
-					
 				</action>
+				
 				<action type="make_directory">$INSTALL_DIR</action>
 				<action type="shell_command">echo "source('http://bioconductor.org/biocLite.R')" &gt; $INSTALL_DIR/runme.R</action>
 				<action type="shell_command">echo "installme=c('edgeR','limma')" &gt;&gt; $INSTALL_DIR/runme.R</action>
@@ -28,7 +29,7 @@
 	   </readme>
 	</package>
 	
-	<package name="design_matrix_creator" version="1.0.0">
+	<package name="package_design_matrix_creator_1_0_0" version="1.0.0">
 		<install version="1.0">
 			<actions>
 				<action type="shell_command">mkdir $INSTALL_DIR/bin ; cp $REPOSITORY_INSTALL_DIR/design_matrix_creator $INSTALL_DIR/bin/</action>
@@ -43,7 +44,7 @@
 		</install>
 	</package>
 	
-	<package name="edger_dge_table_to_bedgraph" version="1.0.0">
+	<package name="package_edger_dge_table_to_bedgraph_1_0_0" version="1.0.0">
 		<install version="1.0">
 			<actions>
 				<action type="shell_command">mkdir $INSTALL_DIR/bin ; cp $REPOSITORY_INSTALL_DIR/edger_dge_table_to_bedgraph $INSTALL_DIR/bin/</action>