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diff test-data/MCF7_featureCounts_Control_4.txt @ 47:777d15393584 draft

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author yhoogstrate
date Wed, 28 May 2014 07:45:34 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/MCF7_featureCounts_Control_4.txt	Wed May 28 07:45:34 2014 -0400
@@ -0,0 +1,22142 @@
+Geneid	GSM1244819: Control_Rep4
+COMMD10	1231
+USP26	0
+DDX17	16358
+DDX11	867
+PTPN20B	0
+SLC35D3	2
+GLOD4	2912
+GIMAP7	0
+TXLNB	25
+MYO18A	4741
+ATG4B	2394
+IFI44L	784
+KHSRP	5513
+KCNAB3	34
+RET	669
+IQCG	229
+C20orf118	14
+GPIHBP1	0
+RASSF3	1277
+FUT8	7977
+LYSMD3	2029
+LMOD3	48
+HIPK1	47991
+HSPA8	76924
+TAS2R39	0
+NR2C2AP	1223
+INADL	8507
+TMEM31	14
+GC	0
+SPP1	1
+ATP6V1B1	615
+GBX2	15
+GALR1	0
+NEDD4L	2362
+GALNT4	742
+MBD4	2648
+PEX10	519
+NXF2	0
+MYOZ1	4
+C9orf64	1297
+ACSF3	1371
+DHX16	2643
+SLC26A11	823
+AP4S1	404
+TM2D2	1055
+ABHD11	3836
+DEFB109P1B	0
+BPHL	874
+INTS9	664
+EFCAB5	5
+LOC220594	139
+C6orf52	128
+TMPRSS7	14
+EDEM2	2153
+PDIK1L	1127
+CD8A	81
+HLA-J	64
+AMT	103
+UBE2L3	4990
+PMS2L2	0
+FAM159A	0
+FAM58B	1
+PPP1R9A	2301
+ERCC1	1597
+C19orf48	2980
+RAB34	6
+SLC4A11	231
+EIF2A	5381
+TAF3	1124
+ATAD3B	145
+CDCA8	1892
+PPIA	74185
+RBM17	4873
+LOC100130776	181
+CLEC1A	0
+C20orf96	256
+NR4A1	1707
+FMO3	0
+LAT2	42
+RBMXL2	0
+EDC4	3915
+PNPLA8	3486
+TACR1	9
+GPR137	1132
+COQ7	961
+FBXO32	546
+LYPD6B	2959
+CXCL12	106
+DCLRE1C	1116
+NFASC	173
+DNAJC5	4194
+PUS7	1859
+B3GALNT1	1192
+FANCD2	2404
+ZNF709	469
+GCNT2	73
+TAF15	5029
+CBY1	1042
+C6orf70	937
+CCL17	15
+MATN3	300
+MAN2A1	3206
+ZNF343	392
+POMT2	1896
+VPS13B	3062
+KIAA0748	0
+TSPAN33	1003
+C20orf141	1
+FAM113A	658
+THUMPD3	3837
+GOLGA2B	1003
+LLGL2	4033
+GOLGA4	7360
+RASA1	3289
+RPL36A	45822
+SUGP2	2993
+ARHGAP25	1
+PCBP3	531
+ALPK1	535
+REPS1	2028
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+KIAA0391	2648
+UBE3C	9139
+ANKRD10	917
+ADAP1	660
+CEP152	738
+KRT14	2
+CD2BP2	8775
+SLC11A2	6385
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+SDF2L1	368
+ATMIN	11220
+WWC1	4692
+SLC26A1	56
+SESN1	1357
+DACT1	4
+C20orf27	1038
+LAMB1	10779
+TP73	43
+PASD1	0
+TAS1R1	3
+AGTRAP	644
+IGLON5	8
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+NEK11	469
+KLK12	0
+GPLD1	61
+LYNX1	7
+RAD51AP2	0
+CCDC18	210
+NRXN3	509
+CLEC12A	0
+SP140L	1061
+VKORC1L1	1193
+PNLDC1	2
+CLEC10A	0
+CAMK2G	3596
+CD200R1	15
+KLK8	8
+SCP2	3851
+C20orf196	117
+PSMB4	21218
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+C11orf73	1159
+LHX6	123
+HSPB8	807
+GAPDHS	127
+UBE2D3	9338
+FITM2	244
+STARD5	171
+CMIP	3246
+PIGY	2466
+SYCN	0
+LILRA5	13
+PPP2R2C	4770
+PSG6	0
+AOX1	82
+SPECC1L	3381
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+KLK11	25
+PLK4	958
+RAB11FIP1	4219
+TARS2	4327
+ATRN	2879
+DEFA1B	0
+LOC645166	79
+KRT71	0
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+CTSA	10622
+GATA2	1098
+GRRP1	0
+GFOD1	97
+TSPAN8	0
+FLRT3	2181
+KCTD2	2667
+NRBP1	12244
+RWDD2B	1619
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+DCAF10	2409
+OTOR	1
+LGSN	16
+ASAP3	1669
+PCID2	1117
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+RPLP0	120006
+LSM14A	7550
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+CD79B	1
+RPL10	77358
+CDK16	6243
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+PPARA	1210
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+TBCEL	804
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+C9orf98	169
+LOC338739	15
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+ZFAND1	2193
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+SHISA4	329
+BFAR	6269
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+PVRL4	1979
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+LAIR2	0
+IL22RA1	16
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+CDK11B	804
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+MED4	1674
+C1orf105	4
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+MANEA	574
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+ST3GAL5	389
+ACTR1A	4535
+TLX1	9
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+CHMP2A	2845
+SNAR-D	0
+SNAR-A14	0
+ADRB2	3
+FTL	55936
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+OR56B1	0
+UGGT2	495
+PRKCA	1882
+HHEX	248
+MED13	21038
+SHMT2	7415
+CAPN3	22
+RAB39B	286
+INO80C	286
+PVR	1051
+ZBTB47	130
+GGT6	228
+MYOZ3	19
+GIGYF2	6264
+FOXN3	4404
+LOC731275	668
+CCL1	0
+SCTR	8
+ARPC3	11950
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+PRAMEF14	0
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+ZNF341	256
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+NFX1	3703
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+PSMD5	3944
+CXCR4	554
+DGUOK	1626
+MYO1D	3979
+WDR11	2323
+PCDHB7	99
+RNASEN	4719
+AHCYL2	2469
+CSPG5	39
+DCTN6	897
+CGREF1	1242
+ALDH8A1	10
+PGM2L1	1100
+FAS	405
+TSC2	3981
+CAMK1	257
+CUL1	4188
+ISLR	0
+MBD6	3789
+SPSB1	942
+GFM1	3011
+GNB5	1415
+FOSB	510
+ZDHHC17	1499
+ORC2L	2016
+RERE	3027
+TAB1	821
+PTPRU	2765
+MRPL55	230
+C20orf152	11
+ANKRD55	6
+C20orf4	3323
+HNRNPD	8646
+CCDC77	227
+C20orf24	5586
+TINAGL1	29
+GATAD1	5457
+CLEC16A	1807
+CXorf65	2
+GGT5	10
+FNDC3A	2812
+LASS1	65
+POLDIP2	7495
+MID2	3953
+ALOXE3	243
+C20orf114	240
+WBP1	5459
+TTC23	677
+FAM57A	916
+C1D	927
+IFI30	4043
+FBLN5	8
+FAM120C	1628
+AEBP2	1684
+GGT1	18
+ANXA7	6803
+GTF2F1	3751
+RBM8A	11706
+RPA2	2289
+TMBIM6	70332
+SLC22A8	1
+HDAC10	526
+ANGPTL6	5
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+MOG	29
+MATK	170
+TAF1C	2258
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+DNAJC28	90
+COMMD4	1651
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+ERV3	1706
+KIAA0495	38
+OSBPL9	4000
+FADS6	16
+ANGPTL5	0
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+CASP1	5
+SLC44A5	5
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+C19orf28	558
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+MAG	2
+SLC32A1	0
+DACH1	16
+BAMBI	23982
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+PPAP2A	421
+ARHGEF6	464
+RUVBL2	2641
+PGM5	847
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+CASC3	4163
+NDC80	783
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+C14orf178	30
+SPAM1	12
+HOMER3	898
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+PDIA6	10425
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+AK2	5039
+BTBD2	1583
+MKKS	2173
+FAM108A1	157
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+ZNF347	387
+TJP2	7769
+CBWD5	0
+SMURF2	2574
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+SLC2A11	545
+THOC6	1239
+LEPRE1	633
+FAM75A7	0
+HEBP1	1993
+C12orf48	534
+RNF208	209
+RNF146	1246
+HSPA5	21795
+PYROXD2	833
+LTBP3	2443
+ERG	68
+EPHB2	628
+MIR585	0
+MIR583	0
+MIR573	0
+RAB3GAP2	2549
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+C20orf54	210
+SLC5A1	0
+MIF	382
+MGST2	835
+MGMT	666
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+CNIH2	289
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+LMLN	662
+LOC100128822	472
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+NELL2	11
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+CDC6	1006
+CCR3	10
+CMA1	2
+DNPEP	4555
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+CIZ1	8027
+PLAGL1	58
+EXOC7	6516
+LZIC	1000
+ACBD6	1604
+DEFB119	0
+GTF2I	6773
+FAM105B	1865
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+UNC93A	0
+SLC6A18	0
+LEPREL4	1335
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+CCT3	15446
+SAMD14	8
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+SNURF	0
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+LUC7L3	5793
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+SLFNL1	3
+AMMECR1L	2852
+SOX7	12
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+SLC12A6	1055
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+PIAS3	6666
+CEPT1	1479
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+ZFP161	1095
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+HOXB7	249
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+FYB	4
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+LCTL	2
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+HSD17B6	78
+TRADD	614
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+STRADA	2223
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+ITIH5	89
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+ATXN7L1	1012
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+DCP2	4065
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+OVCH2	0
+LONRF2	1220
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+ZNHIT6	540
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+TIAL1	4323
+NAP1L1	24313
+C16orf7	640
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+XDH	9
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+DGKQ	481
+MAP3K7	2622
+CT47A6	0
+CT47A7	0
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+DGKA	918
+C2orf24	4806
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+MIR9-2	0
+MIR664	0
+ZNF564	1135
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+MIR511-1	0
+C21orf70	687
+PDDC1	1265
+C12orf51	2807
+WISP3	0
+KCNAB1	10
+CAMSAP1	4259
+AHCTF1	4161
+CNOT6	5915
+RPP30	960
+AGPAT2	1505
+TBCD	3125
+CORO2B	14
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+CYP4F8	13
+FLJ32063	1
+HDAC6	1704
+HS3ST2	0
+SLC35A3	970
+CCDC106	255
+MRC2	262
+VIPR1	771
+SESN2	2162
+LMAN2L	1767
+HCRTR2	0
+DUSP4	2132
+C14orf129	2321
+MYOCD	4
+KRT80	19337
+GPRASP1	183
+CNRIP1	1
+FAM160A1	1076
+RHBG	171
+BCL2L10	3
+NLRC5	189
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+PDCD11	3177
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+RCL1	977
+DHRS9	7
+LPCAT3	3121
+RASA4	1627
+POLD3	2075
+ARL13A	15
+C2orf83	33
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+GRM4	1063
+CLCN2	347
+DHRS4	440
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+SLC35F2	959
+LOC100133050	6
+SYT14L	0
+LOC284661	0
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+MGC34034	1
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+SIK2	1139
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+HYAL2	431
+FAM43A	240
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+GTF3C5	4968
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+CLINT1	5723
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+IZUMO4	16
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+CEMP1	100
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+ZFP36L1	15637
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+NDUFA8	1969
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+HIST1H4K	5
+HIST1H3H	63
+HIST1H4L	0
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+KIRREL2	0
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+ASNSD1	2118
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+GLRX5	2906
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+EXOC8	1190
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+SNORD115-7	0
+SNORD115-16	0
+SNORD115-6	0
+FKBP4	11947
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+PRR12	821
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+IRF2BP2	6512
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+APBB2	5975
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+CRTC1	490
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+SKIV2L	3068
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+UBE2Q1	4674
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+OXSM	599
+PAK1IP1	746
+AKTIP	2017
+SNRPD1	2568
+MAN2C1	1905
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+RAB3GAP1	4349
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+MLKL	372
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+SNORA75	9
+SNORA78	0
+SNORA77	0
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+SNORA71C	15
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+SNORA53	4
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+IPPK	907
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+PLAU	2
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+F7	80
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+CLDN20	5
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+SLC8A2	13
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+MBNL1	5400
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+GAGE8	0
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+NEURL2	56
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+SOCS6	1500
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+STK17B	988
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+RADIL	7
+RBFOX2	2738
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+PSG1	2
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+TMEM186	755
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+PTPN2	1474
+WDR53	733
+DHRS13	809
+SLC3A2	14385
+UGT2A2	0
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+DNHD1	143
+DTWD2	790
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+FIBIN	0
+C17orf70	470
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+ECEL1	67
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+ADCY4	4
+ADAM15	4323
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+IFNG	0
+BNIP1	664
+C1orf159	88
+C1orf77	2348
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+C4orf31	0
+UCN2	0
+DPM2	1767
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+SLC35C1	1729
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+WWC2	1347
+DERL2	1015
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+WFDC10B	0
+NBPF16	509
+HCG9	3
+PCDH7	60
+TIMM8A	786
+PCNA	2766
+MIR518D	0
+MIR518A1	0
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+PHOSPHO1	12
+BANF2	0
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+EDNRA	84
+ACE	89
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+FAM151B	87
+ACCSL	1
+HLA-DRB1	156
+CCDC94	869
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+BUB1	2956
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+HNRNPA0	6562
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+SOHLH1	1
+C16orf74	431
+TSPYL5	3841
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+MS4A6A	0
+TIGD2	381
+ATXN2L	8053
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+KDM1A	5598
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+ARFGAP3	936
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+VEZT	3850
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+LGALS2	1
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+ZNF217	66361
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+C5orf30	1814
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+HIST3H2A	87
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+FLJ42709	8
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+LOC92659	89
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+KRTAP19-3	0
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+KRTAP6-3	0
+KRTAP6-2	0
+KRTAP6-1	0
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+DENND2D	2520
+RIN2	977
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+AGFG1	3557
+TM4SF4	4
+RFC3	1682
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+LGALS14	0
+PPIL5	727
+MRFAP1L1	4530
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+QTRTD1	1723
+FGF21	0
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+DSC1	43
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+PUS7L	629
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+BCS1L	946
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+OCLN	1544
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+RPP14	911
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+CLCN7	2568
+TMUB1	749
+EPHX2	163
+MNDA	0
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+SAP30	267
+NUDC	3801
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+TIRAP	337
+GLIS2	844
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+C10orf47	577
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+RRBP1	2963
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+NFYB	4641
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+C10orf118	2243
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+ST7	466
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+GLB1	5798
+ST18	0
+SLC9A8	1669
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+SCRG1	0
+ACOT7	858
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+SIX1	823
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+FLT3LG	73
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+COPS4	1696
+C20orf12	251
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+DNM1L	2929
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+RSPO3	0
+HAVCR2	43
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+AGPAT1	2633
+RABAC1	616
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+ACVR1B	3523
+ALDH7A1	4339
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+LOC283693	19
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+RNF2	860
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+LOC652276	323
+KCNH2	95
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+PRUNE	4503
+PLCXD1	0
+CILP	8
+HLA-A	5043
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+PTMS	13226
+CIAO1	5760
+AXIN1	1788
+SUFU	1138
+POU4F2	0
+GPRIN1	1097
+MYOC	0
+MYO7A	28
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+VWC2L	0
+ALG11	304
+GAMT	227
+PCDHB4	196
+FAM20C	79
+RNPEP	3155
+ETV4	403
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+CDKN2A	3
+USP44	0
+OR7A17	0
+ZMIZ1	4324
+RPGRIP1L	267
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+MOV10L1	2
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+ERO1L	2768
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+LOC349196	0
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+KBTBD2	4925
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+FXR2	2510
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+MRPL45	1442
+PRDM1	20
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+AURKAIP1	1575
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+C9orf16	312
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+PNPLA2	878
+INPP5K	2298
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+SNAI2	18
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+CLDND2	8
+ZNRD1AS	55
+DKFZP434I0714	264
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+USP25	2359
+SNAI1	48
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+LSM14B	3100
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+EML3	1996
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+ANKRD28	5290
+UPF3B	1980
+ANKRA2	1037
+PAQR7	745
+LOC401980	7
+C12orf74	0
+LOC100288276	0
+C11orf92	109
+LOC100130890	100
+LOC646960	0
+LOC646862	0
+LOC100130705	103
+TRPM4	1290
+PRODH	46
+LOC730005	1
+ZNF783	1486
+LOC155060	279
+YIPF6	2503
+TRIM49L2	0
+MIR762	0
+MIR449C	0
+PMS2L3	407
+TMEM216	971
+LOC400573	12
+LOC645781	12
+LOC729966	1
+LOC645971	0
+NAT14	609
+CD207	11
+LOC389023	0
+PSMB10	751
+LOC100287482	509
+LOC100133267	0
+KLHDC8B	360
+PDZD7	105
+LOC100129361	760
+MIR764	0
+MIR761	0
+MIR670	0
+FAM64A	472
+LOC100289650	0
+LOC400958	55
+LOC100129480	255
+ALG1L	656
+SPINK6	0
+IRF4	2
+ITPR3	5027
+LOC100129335	0
+LOC100131199	2763
+LOC401504	3378
+LOC100129520	0
+C11orf83	214
+ZNF28	1438
+XPNPEP3	574
+SCG2	20
+MIR2278	0
+MIR2277	0
+MIR2276	0
+MIR548Q	0
+MIR2117	0
+MIR2116	0
+MIR2114	0
+MIR759	0
+FEZ1	571
+ZBTB39	1067
+BAG5	4008
+TMEM99	737
+RHBDF2	658
+TLR10	70
+ARL4A	912
+LOC100132715	4
+LINS	0
+GTPBP3	429
+TKT	29129
+TRH	0
+LOC100500773	0
+ELMOD2	1470
+DCLK2	7
+LOC728622	9
+MIR1972-1	0
+ZFHX2	246
+C16orf11	0
+IFI35	1286
+CCDC6	7888
+OR7D2	48
+ZNF865	355
+RBM5	3082
+RBX1	1396
+TOPORS	1819
+DHFRL1	501
+C3orf27	16
+HTRA3	0
+CPZ	70
+TMPRSS11BNL	14
+CARD11	0
+LYPD6	3177
+VAPB	11486
+C16orf93	28
+ELP1P	3
+CXCL11	6
+SCARA5	4
+C8orf37	156
+FAM84B	10024
+LRRC14	756