Mercurial > repos > yhoogstrate > edger_with_design_matrix
comparison edgeR_DGE.xml @ 16:fba5577122a8 draft
Uploaded
| author | yhoogstrate |
|---|---|
| date | Thu, 09 Jan 2014 08:58:20 -0500 |
| parents | db9eb4b6f778 |
| children | 8a9649241964 |
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| 15:db9eb4b6f778 | 16:fba5577122a8 |
|---|---|
| 41 </param> | 41 </param> |
| 42 </inputs> | 42 </inputs> |
| 43 | 43 |
| 44 <configfiles> | 44 <configfiles> |
| 45 <configfile name="R_script"> | 45 <configfile name="R_script"> |
| 46 library(edgeR) | 46 library(edgeR,quietly=TRUE) ## enable quietly to avoid unnecessaity stderr dumping for loading limma |
| 47 | 47 |
| 48 ## Fetch commandline arguments | 48 ## Fetch commandline arguments |
| 49 args <- commandArgs(trailingOnly = TRUE) | 49 args <- commandArgs(trailingOnly = TRUE) |
| 50 designmatrix = args[1] | 50 designmatrix = args[1] |
| 51 contrast = args[2] | 51 contrast = args[2] |