Mercurial > repos > yhoogstrate > edger_with_design_matrix

comparison tool_dependencies.xml @ 91:c81da57fff20 draft

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Uploaded
author yhoogstrate
date Mon, 09 Mar 2015 08:35:13 -0400
parents c5a81e84a87a
children 86c3aaa205b5
comparison
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90:f87938c392bf 91:c81da57fff20
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="R" version="3.0.3"> 3 <package name="R" version="3.0.3">
4 <repository changeset_revision="9ff23e0b280b" name="package_r_3_0_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="e509651776fa" name="package_r_3_0_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 6
7 <package name="biocLite_edgeR_limma" version="latest"> 7 <package name="biocLite_edgeR_limma" version="latest">
8 <install version="1.0"> 8 <install version="1.0">
9 <actions> 9 <actions>
10 <action type="set_environment_for_install"> 10 <action type="set_environment_for_install">
11 <repository changeset_revision="9ff23e0b280b" name="package_r_3_0_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> 11 <repository changeset_revision="e509651776fa" name="package_r_3_0_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
12 <package name="R" version="3.0.3" /> 12 <package name="R" version="3.0.3" />
13 </repository> 13 </repository>
14 14
15 </action> 15 </action>
16 <action type="make_directory">$INSTALL_DIR</action> 16 <action type="make_directory">$INSTALL_DIR</action>
26 <readme> 26 <readme>
27 Installs the latest bioc packages: edgeR &amp; Limma 27 Installs the latest bioc packages: edgeR &amp; Limma
28 </readme> 28 </readme>
29 </package> 29 </package>
30 30
31 <!-- instead of using "convert", make use of "gm convert" -->
32 <package name="graphicsmagick" version="1.3.18">
33 <repository changeset_revision="bff3f66adff2" name="package_graphicsmagick_1_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
34 </package>
35
36 <package name="design_matrix_creator" version="1.0.0"> 31 <package name="design_matrix_creator" version="1.0.0">
37 <install version="1.0"> 32 <install version="1.0">
38 <actions> 33 <actions>
39 <action type="shell_command">mkdir $INSTALL_DIR/bin ; cp $REPOSITORY_INSTALL_DIR/design_matrix_creator $INSTALL_DIR/bin/</action> 34 <action type="shell_command">mkdir $INSTALL_DIR/bin ; cp $REPOSITORY_INSTALL_DIR/design_matrix_creator $INSTALL_DIR/bin/</action>
40 <action type="chmod"> 35 <action type="chmod">