Mercurial > repos > yhoogstrate > edger_with_design_matrix
comparison tool_dependencies.xml @ 98:943778e4dafa draft
planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/edger_with_design_matrix commit 73d87531bc80b0a4e688001cd5f8ab1df9526c08-dirty
| author | yhoogstrate |
|---|---|
| date | Wed, 27 May 2015 09:25:31 -0400 |
| parents | b26040bb6301 |
| children | 6abdc14b79c2 |
comparison
equal
deleted
inserted
replaced
| 97:b26040bb6301 | 98:943778e4dafa |
|---|---|
| 5 </package> | 5 </package> |
| 6 | 6 |
| 7 <package name="biocLite_edgeR_limma" version="latest"> | 7 <package name="biocLite_edgeR_limma" version="latest"> |
| 8 <install version="1.0"> | 8 <install version="1.0"> |
| 9 <actions> | 9 <actions> |
| 10 | |
| 11 <action type="set_environment_for_install"> | 10 <action type="set_environment_for_install"> |
| 12 <repository changeset_revision="e509651776fa" name="package_r_3_0_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> | 11 <repository changeset_revision="e509651776fa" name="package_r_3_0_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> |
| 13 <package name="R" version="3.0.3" /> | 12 <package name="R" version="3.0.3" /> |
| 14 </repository> | 13 </repository> |
| 14 | |
| 15 </action> | 15 </action> |
| 16 | |
| 17 <action type="make_directory">$INSTALL_DIR</action> | 16 <action type="make_directory">$INSTALL_DIR</action> |
| 18 <action type="shell_command">echo "source('http://bioconductor.org/biocLite.R')" > $INSTALL_DIR/runme.R</action> | 17 <action type="shell_command">echo "source('http://bioconductor.org/biocLite.R')" > $INSTALL_DIR/runme.R</action> |
| 19 <action type="shell_command">echo "installme=c('edgeR','limma')" >> $INSTALL_DIR/runme.R</action> | 18 <action type="shell_command">echo "installme=c('edgeR','limma')" >> $INSTALL_DIR/runme.R</action> |
| 20 <action type="shell_command">echo "biocLite()" >> $INSTALL_DIR/runme.R</action> | 19 <action type="shell_command">echo "biocLite()" >> $INSTALL_DIR/runme.R</action> |
| 21 <action type="shell_command">echo "biocLite(installme)" >> $INSTALL_DIR/runme.R</action> | 20 <action type="shell_command">echo "biocLite(installme)" >> $INSTALL_DIR/runme.R</action> |