Mercurial > repos > yhoogstrate > edger_with_design_matrix
comparison tool_dependencies.xml @ 64:8a4febbc60b7 draft
Uploaded
| author | yhoogstrate |
|---|---|
| date | Tue, 30 Sep 2014 07:21:12 -0400 |
| parents | 829cabfc4707 |
| children | c8f607e8bd7b |
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| 63:829cabfc4707 | 64:8a4febbc60b7 |
|---|---|
| 4 <!-- the following repo does NOT work out of the box: | 4 <!-- the following repo does NOT work out of the box: |
| 5 <package name="package_r3_withx" version="3.0.1"> | 5 <package name="package_r3_withx" version="3.0.1"> |
| 6 <repository changeset_revision="abc274f22004" name="package_r3_withx" owner="joachim-jacob" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> | 6 <repository changeset_revision="abc274f22004" name="package_r3_withx" owner="joachim-jacob" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> |
| 7 </package> | 7 </package> |
| 8 --> | 8 --> |
| 9 <package name="R_3_0_2" version="3.0.2"> | 9 |
| 10 <repository changeset_revision="b6fe8ca3230d" name="package_r_3_0_2" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> | 10 <package name="R" version="3.1.0"> |
| 11 <repository changeset_revision="a6cc7706ea14" name="package_r_3_1_0" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> | |
| 11 </package> | 12 </package> |
| 12 | 13 |
| 13 <package name="package_biocLite_edgeR_limma" version="latest"> | 14 <package name="package_biocLite_edgeR_limma" version="latest"> |
| 14 <install version="1.0"> | 15 <install version="1.0"> |
| 15 <actions> | 16 <actions> |
| 17 <!-- the following repo does NOT work out of the box: | 18 <!-- the following repo does NOT work out of the box: |
| 18 <repository changeset_revision="abc274f22004" name="package_r3_withx" owner="joachim-jacob" toolshed="http://testtoolshed.g2.bx.psu.edu/"> | 19 <repository changeset_revision="abc274f22004" name="package_r3_withx" owner="joachim-jacob" toolshed="http://testtoolshed.g2.bx.psu.edu/"> |
| 19 <package name="package_r3_withx" version="3.0.1" /> | 20 <package name="package_r3_withx" version="3.0.1" /> |
| 20 </repository> | 21 </repository> |
| 21 --> | 22 --> |
| 22 <repository changeset_revision="b6fe8ca3230d" name="package_r_3_0_2" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu/"> | 23 <repository changeset_revision="a6cc7706ea14" name="package_r_3_1_0" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu/"> |
| 23 <package name="R_3_0_2" version="3.0.2" /> | 24 <package name="R" version="3.1.0" /> |
| 24 </repository> | 25 </repository> |
| 25 </action> | 26 </action> |
| 26 <action type="make_directory">$INSTALL_DIR</action> | 27 <action type="make_directory">$INSTALL_DIR</action> |
| 27 <action type="shell_command">echo "source('http://bioconductor.org/biocLite.R')" > $INSTALL_DIR/runme.R</action> | 28 <action type="shell_command">echo "source('http://bioconductor.org/biocLite.R')" > $INSTALL_DIR/runme.R</action> |
| 28 <action type="shell_command">echo "installme=c('edgeR','limma')" >> $INSTALL_DIR/runme.R</action> | 29 <action type="shell_command">echo "installme=c('edgeR','limma')" >> $INSTALL_DIR/runme.R</action> |