comparison edgeR_Design_from_Expression_Matrix.xml @ 94:46745f5666ac draft

Added test

93:31335aa52b2e

	
	<outputs>
		<data format="tabular" name="design_matrix" label="Design matrix" />
	</outputs>
	
	<help>
edgeR: Design- from Expression matrix
#####################################

Overview

http://toolshed.g2.bx.psu.edu

http://testtoolshed.g2.bx.psu.edu/
	</help>
</tool>

94:46745f5666ac

	
	<outputs>
		<data format="tabular" name="design_matrix" label="Design matrix" />
	</outputs>
	
	
	<tests>
		<test>
			<param name="expression_matrix" value="GSE51403/GSE51403_expression_matrix_full.txt" />
			
			<!-- <repeat name="treatments"> -->
				<param name="treatments_0|name" value="Treatment" />
				<!-- <repeat name="rep_factorLevel"> -->
					<param name="treatments_0|rep_factorLevel_0|factorLevel" value="Control" />
					<param name="treatments_0|rep_factorLevel_0|factorIndex" value="2,3,4,5,6,7,8" />
				<!-- </repeat> -->
				<!-- <repeat name="rep_factorLevel"> -->
					<param name="treatments_0|rep_factorLevel_1|factorLevel" value="E2" />
					<param name="treatments_0|rep_factorLevel_1|factorIndex" value="9,10,11,12,13,14,15" />
				<!-- </repeat> -->
			<!-- </repeat> -->
			
			<conditional name="choose_blocking">
				<param value="false" />
			</conditional>
			
			<output name="design_matrix" file="GSE51403/GSE51403_design_matrix_full_depth.txt" />
		</test>
	</tests>
	
	<help>
edgeR: Design- from Expression matrix
#####################################

Overview

http://toolshed.g2.bx.psu.edu

http://testtoolshed.g2.bx.psu.edu/
	</help>
	
	<citations>
		<citation type="doi">10.1093/bioinformatics/btp616</citation>
		<citation type="doi">10.1093/bioinformatics/btt688</citation>
	</citations>
</tool>