Mercurial > repos > yhoogstrate > edger_with_design_matrix
comparison tool_dependencies.xml @ 61:415b1fabdd4a draft
Uploaded
| author | yhoogstrate |
|---|---|
| date | Tue, 30 Sep 2014 05:08:49 -0400 |
| parents | bcc237ae7050 |
| children | 829cabfc4707 |
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| 60:c5cc1b24f7d8 | 61:415b1fabdd4a |
|---|---|
| 7 | 7 |
| 8 <package name="package_biocLite_edgeR_limma" version="latest"> | 8 <package name="package_biocLite_edgeR_limma" version="latest"> |
| 9 <install version="1.0"> | 9 <install version="1.0"> |
| 10 <actions> | 10 <actions> |
| 11 <action type="set_environment_for_install"> | 11 <action type="set_environment_for_install"> |
| 12 <!-- the following repo does NOT work out of the box: | |
| 12 <repository changeset_revision="abc274f22004" name="package_r3_withx" owner="joachim-jacob" toolshed="http://testtoolshed.g2.bx.psu.edu/"> | 13 <repository changeset_revision="abc274f22004" name="package_r3_withx" owner="joachim-jacob" toolshed="http://testtoolshed.g2.bx.psu.edu/"> |
| 13 <package name="package_r3_withx" version="3.0.1" /> | 14 <package name="package_r3_withx" version="3.0.1" /> |
| 15 </repository> | |
| 16 --> | |
| 17 <repository changeset_revision="b6fe8ca3230d" name="package_r_3_0_2" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu/"> | |
| 18 <package name="R_3_0_2" version="3.0.2" /> | |
| 14 </repository> | 19 </repository> |
| 15 </action> | 20 </action> |
| 16 <action type="make_directory">$INSTALL_DIR</action> | 21 <action type="make_directory">$INSTALL_DIR</action> |
| 17 <action type="shell_command">echo "source('http://bioconductor.org/biocLite.R')" > $INSTALL_DIR/runme.R</action> | 22 <action type="shell_command">echo "source('http://bioconductor.org/biocLite.R')" > $INSTALL_DIR/runme.R</action> |
| 18 <action type="shell_command">echo "installme=c('edgeR','limma')" >> $INSTALL_DIR/runme.R</action> | 23 <action type="shell_command">echo "installme=c('edgeR','limma')" >> $INSTALL_DIR/runme.R</action> |