comparison edgeR_Differential_Gene_Expression.xml @ 110:3112b2926266 draft

planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/edger_with_design_matrix commit 2700e500a4fb135a20ede7d52221a9d31f1aaa5e-dirty

109:dfebd3787276

               source="stderr"
               level="warning"
               description="LOCALE has not been set correctly" />
    </stdio>
    
    <version_command>echo $(R --version | grep version | grep -v GNU) " , EdgeR version" $(R --vanilla --slave -e "library(edgeR) ; cat(sessionInfo()\$otherPkgs\$edgeR\$Version)" 2&gt; /dev/null | grep -v -i "WARNING: ")</version_command>
    
    <command>
        R --vanilla --slave -f $R_script '--args
            $expression_matrix
            $design_matrix

110:3112b2926266

               source="stderr"
               level="warning"
               description="LOCALE has not been set correctly" />
    </stdio>
    
    <version_command>echo $(R --version | grep version | grep -v GNU) ", EdgeR version" $(R --vanilla --slave -e "library(edgeR) ; cat(sessionInfo()\$otherPkgs\$edgeR\$Version)" 2&gt; /dev/null | grep -v -i "WARNING: ")</version_command>
    
    <command>
        R --vanilla --slave -f $R_script '--args
            $expression_matrix
            $design_matrix