Mercurial > repos > yhoogstrate > edger_with_design_matrix
comparison tool_dependencies.xml @ 107:049d8bc2214e draft
planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/edger_with_design_matrix commit 2700e500a4fb135a20ede7d52221a9d31f1aaa5e-dirty
| author | yhoogstrate |
|---|---|
| date | Tue, 01 Sep 2015 04:32:16 -0400 |
| parents | 56117c9db713 |
| children | f1ec1b5e9fa4 |
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| 106:56117c9db713 | 107:049d8bc2214e |
|---|---|
| 5 </package> | 5 </package> |
| 6 | 6 |
| 7 <package name="design_matrix_creator" version="1.0.0"> | 7 <package name="design_matrix_creator" version="1.0.0"> |
| 8 <install version="1.0"> | 8 <install version="1.0"> |
| 9 <actions> | 9 <actions> |
| 10 <action type="shell_command">ls -als ; echo "###############" ; ls -als $REPOSITORY_INSTALL_DIR ; pwd ; mkdir $INSTALL_DIR/bin ; cp $REPOSITORY_INSTALL_DIR/design_matrix_creator $INSTALL_DIR/bin/</action> | 10 <action type="shell_command">mkdir $INSTALL_DIR/bin ; cp $REPOSITORY_INSTALL_DIR/bin/design_matrix_creator $INSTALL_DIR/bin/</action> |
| 11 <action type="chmod"> | 11 <action type="chmod"> |
| 12 <file mode="755">$INSTALL_DIR/bin/design_matrix_creator</file> | 12 <file mode="755">$INSTALL_DIR/bin/design_matrix_creator</file> |
| 13 </action> | 13 </action> |
| 14 <action type="set_environment"> | 14 <action type="set_environment"> |
| 15 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> | 15 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> |
| 20 </package> | 20 </package> |
| 21 | 21 |
| 22 <package name="edger_dge_table_to_bedgraph" version="1.0.0"> | 22 <package name="edger_dge_table_to_bedgraph" version="1.0.0"> |
| 23 <install version="1.0"> | 23 <install version="1.0"> |
| 24 <actions> | 24 <actions> |
| 25 <action type="shell_command">mkdir $INSTALL_DIR/bin ; cp $REPOSITORY_INSTALL_DIR/edger_dge_table_to_bedgraph $INSTALL_DIR/bin/</action> | 25 <action type="shell_command">mkdir $INSTALL_DIR/bin ; cp $REPOSITORY_INSTALL_DIR/bin/edger_dge_table_to_bedgraph $INSTALL_DIR/bin/</action> |
| 26 <action type="chmod"> | 26 <action type="chmod"> |
| 27 <file mode="755">$INSTALL_DIR/bin/edger_dge_table_to_bedgraph</file> | 27 <file mode="755">$INSTALL_DIR/bin/edger_dge_table_to_bedgraph</file> |
| 28 </action> | 28 </action> |
| 29 <action type="set_environment"> | 29 <action type="set_environment"> |
| 30 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> | 30 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> |