Mercurial > repos > yhoogstrate > crossmap

view test-data/test_bam_01_output_a.sam @ 25:e25d9d76be82 draft

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author yhoogstrate
date Mon, 31 Aug 2015 08:07:21 -0400
parents 263581d4dd90
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@HD	VN:1.0	SO:coordinate
@SQ	SN:chr1	LN:247249719
@SQ	SN:chr10	LN:135374737
@SQ	SN:chr2	LN:242951149
@SQ	SN:chr3	LN:199501827
@SQ	SN:chr4	LN:191273063
@PG	ID:-	VN:1.0.0	CL:cmatrix
@PG	ID:CrossMap	VN:0.2
@CO	Test data for CrossMap bam
@CO	Liftover from original BAM/SAM file: 
@CO	Liftover is based on the chain file: 
read_001	0	chr1	89863	60	50M	=	1	0	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	*
read_002	0	chr2	90000	60	50M	chr1	1	0	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	*
read_003	0	chr3	75000	60	50M	chr1	1	0	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	*
read_006	0	chr1	989863	60	50M	=	1	0	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	*
read_007	0	chr2	990000	60	50M	chr1	1	0	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	*
read_008	0	chr3	975000	60	50M	chr1	1	0	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	*
read_011	16	chr1	89863	60	50M	=	1	0	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	*
read_012	16	chr2	90000	60	50M	chr1	1	0	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	*
read_013	16	chr3	75000	60	50M	chr1	1	0	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	*
read_016	16	chr1	989863	60	50M	=	1	0	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	*
read_017	16	chr2	990000	60	50M	chr1	1	0	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	*
read_018	16	chr3	975000	60	50M	chr1	1	0	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	*