comparison crossmap.xml @ 37:9e99c09ebe84 draft default tip

planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit 2a0f8a26551929e52f6aea1d109b8a3bda81af8b-dirty

36:47d4f148eb8c

        <requirement type="package" version="2.7">python</requirement>
        <requirement type="package" version="0.2">crossmap</requirement>
    </requirements>
    
    <stdio>
        <regex match="Usage: CrossMap.py" source="stdout" level="fatal"/>
        <regex match=".*" source="both" level="log"/>
    </stdio>
    
    <version_command>python $CROSSMAP_ROOT_DIR/bin/CrossMap.py 2&gt;&amp;1 | head -n 1 | grep -E --only-matching 'CrossMap.*'</version_command>
    
    <!-- First line of CrossMap has hardcoded "#!/usr/bin/python". This makes use of Galaxy's python: -->

37:9e99c09ebe84

        <requirement type="package" version="2.7">python</requirement>
        <requirement type="package" version="0.2">crossmap</requirement>
    </requirements>
    
    <stdio>
        <regex match="Aborted (core dumped)" source="stdout" level="fatal"/>
        <regex match=".*" source="both" level="log"/>
        <exit_code range="1:" />
    </stdio>
    
    <version_command>python $CROSSMAP_ROOT_DIR/bin/CrossMap.py 2&gt;&amp;1 | head -n 1 | grep -E --only-matching 'CrossMap.*'</version_command>
    
    <!-- First line of CrossMap has hardcoded "#!/usr/bin/python". This makes use of Galaxy's python: -->