Mercurial > repos > yhoogstrate > crossmap

annotate test-data/test_vcf_01_input.vcf @ 37:9e99c09ebe84 draft default tip

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit 2a0f8a26551929e52f6aea1d109b8a3bda81af8b-dirty
author yhoogstrate
date Thu, 12 Nov 2015 16:38:32 -0500
parents 7e32d2a88c07
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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13
7e32d2a88c07 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit 853297e61ca5fecafe4f09ec449e2731515b32c1-dirty
yhoogstrate
parents:
diff changeset
1 ##fileformat=VCFv4.2
7e32d2a88c07 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit 853297e61ca5fecafe4f09ec449e2731515b32c1-dirty
yhoogstrate
parents:
diff changeset
2 ##FORMAT=<ID=GT,Number=1,Type=Integer,Description="Genotype">
7e32d2a88c07 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit 853297e61ca5fecafe4f09ec449e2731515b32c1-dirty
yhoogstrate
parents:
diff changeset
3 ##FORMAT=<ID=GP,Number=G,Type=Float,Description="Genotype Probabilities">
7e32d2a88c07 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit 853297e61ca5fecafe4f09ec449e2731515b32c1-dirty
yhoogstrate
parents:
diff changeset
4 ##FORMAT=<ID=PL,Number=G,Type=Float,Description="Phred-scaled Genotype Likelihoods">
7e32d2a88c07 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit 853297e61ca5fecafe4f09ec449e2731515b32c1-dirty
yhoogstrate
parents:
diff changeset
5 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT SAMP001 SAMP002
7e32d2a88c07 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit 853297e61ca5fecafe4f09ec449e2731515b32c1-dirty
yhoogstrate
parents:
diff changeset
6 1 10 rs11449 G A . PASS . GT 0/0 0/1
7e32d2a88c07 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit 853297e61ca5fecafe4f09ec449e2731515b32c1-dirty
yhoogstrate
parents:
diff changeset
7 1 100 rs84825 C C . PASS . GT:GP 0/1:. 0/1:0.03,0.97,0
7e32d2a88c07 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit 853297e61ca5fecafe4f09ec449e2731515b32c1-dirty
yhoogstrate
parents:
diff changeset
8 1 200 rs84823 T G . PASS . GT:PL ./.:. 1/1:10,5,0