Mercurial > repos > yhoogstrate > crossmap

annotate README.rst @ 24:b586c38fc381 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit 290b453ad2abdb65322ec2e50889aaf2b03bb095-dirty
author yhoogstrate
date Fri, 28 Aug 2015 09:35:52 -0400
parents 39d95e2675f5
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
5
39d95e2675f5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit 8f9242188a8e8e942af6625014a959e70dcb896a
yhoogstrate
parents:
diff changeset
1 CrossMap wrapper for Galaxy
39d95e2675f5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit 8f9242188a8e8e942af6625014a959e70dcb896a
yhoogstrate
parents:
diff changeset
2 ===========================
39d95e2675f5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit 8f9242188a8e8e942af6625014a959e70dcb896a
yhoogstrate
parents:
diff changeset
3
39d95e2675f5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit 8f9242188a8e8e942af6625014a959e70dcb896a
yhoogstrate
parents:
diff changeset
4 CrossMap is versatile tool to convert genome coordinates or annotation files between genome
39d95e2675f5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit 8f9242188a8e8e942af6625014a959e70dcb896a
yhoogstrate
parents:
diff changeset
5 assemblies. It supports mostly commonly used file types, including BAM, BED,BigWig, GFF,
39d95e2675f5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit 8f9242188a8e8e942af6625014a959e70dcb896a
yhoogstrate
parents:
diff changeset
6 GTF, SAM, Wiggle, and VCF formats. For large plain text file types, such as BED, GFF, GTF
39d95e2675f5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit 8f9242188a8e8e942af6625014a959e70dcb896a
yhoogstrate
parents:
diff changeset
7 and VCF, reading from remote servers and file compression are supported.