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annotate README.rst @ 20:386e76dfcd77 draft

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit d4e9fe61901a612c78d9f26f172537b27fd2ddbb-dirty
author yhoogstrate
date Thu, 27 Aug 2015 04:58:29 -0400
parents 39d95e2675f5
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39d95e2675f5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit 8f9242188a8e8e942af6625014a959e70dcb896a
yhoogstrate
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1 CrossMap wrapper for Galaxy
39d95e2675f5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit 8f9242188a8e8e942af6625014a959e70dcb896a
yhoogstrate
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2 ===========================
39d95e2675f5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit 8f9242188a8e8e942af6625014a959e70dcb896a
yhoogstrate
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3
39d95e2675f5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit 8f9242188a8e8e942af6625014a959e70dcb896a
yhoogstrate
parents:
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4 CrossMap is versatile tool to convert genome coordinates or annotation files between genome
39d95e2675f5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit 8f9242188a8e8e942af6625014a959e70dcb896a
yhoogstrate
parents:
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5 assemblies. It supports mostly commonly used file types, including BAM, BED,BigWig, GFF,
39d95e2675f5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit 8f9242188a8e8e942af6625014a959e70dcb896a
yhoogstrate
parents:
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6 GTF, SAM, Wiggle, and VCF formats. For large plain text file types, such as BED, GFF, GTF
39d95e2675f5 planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit 8f9242188a8e8e942af6625014a959e70dcb896a
yhoogstrate
parents:
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7 and VCF, reading from remote servers and file compression are supported.