# HG changeset patch
# User yboursin
# Date 1477054847 14400
# Node ID e5c7c06fd7625b1688e00e1c366946c452e927e8
# Parent  67c078448bea74fce240f954deacf0c1e26107c1
Fixed --polyA option and cheetah error

diff -r 67c078448bea -r e5c7c06fd762 rsem_prepare_reference.xml
--- a/rsem_prepare_reference.xml	Fri Oct 21 08:51:23 2016 -0400
+++ b/rsem_prepare_reference.xml	Fri Oct 21 09:00:47 2016 -0400
@@ -19,6 +19,7 @@
       #if $polya.polya_length:
         --polyA-length $polya.polya_length
       #end if
+    #end if
     $ntog
     $bowtie
     $bowtietwo