Mercurial > repos > yboursin > ebseq_eba

diff GetAllPatterns.R @ 0:ddd3dad04441 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author yboursin
date Thu, 20 Oct 2016 08:59:24 -0400
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/GetAllPatterns.R	Thu Oct 20 08:59:24 2016 -0400
@@ -0,0 +1,24 @@
+sink(file="/tmp/none")
+sink("/dev/null")
+options(warn=-1)
+options(echo=F) 
+
+invisible("EBSeq")
+suppressMessages(library("EBSeq"))
+
+args <- commandArgs()
+inputfile <- args[6]
+outputfile <- args[7]
+#PairwisePlots <-args[6]
+
+print(args)
+
+Conds=strsplit(inputfile,split=",")[[1]]
+
+
+Out=GetPatterns(Conds)
+
+
+#write.table(Out,file=outputfile,quote=F,col.names=T,row.names=T,sep = "\t")
+write.table(Out,file=outputfile,quote=F,col.names=NA,row.names=T,sep = "\t")  ##cms - changed on 11/11/13
+