Mercurial > repos > yboursin > ebseq_eba
comparison GetAllPatterns.R @ 0:ddd3dad04441 draft default tip
Uploaded
| author | yboursin |
|---|---|
| date | Thu, 20 Oct 2016 08:59:24 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:ddd3dad04441 |
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| 1 sink(file="/tmp/none") | |
| 2 sink("/dev/null") | |
| 3 options(warn=-1) | |
| 4 options(echo=F) | |
| 5 | |
| 6 invisible("EBSeq") | |
| 7 suppressMessages(library("EBSeq")) | |
| 8 | |
| 9 args <- commandArgs() | |
| 10 inputfile <- args[6] | |
| 11 outputfile <- args[7] | |
| 12 #PairwisePlots <-args[6] | |
| 13 | |
| 14 print(args) | |
| 15 | |
| 16 Conds=strsplit(inputfile,split=",")[[1]] | |
| 17 | |
| 18 | |
| 19 Out=GetPatterns(Conds) | |
| 20 | |
| 21 | |
| 22 #write.table(Out,file=outputfile,quote=F,col.names=T,row.names=T,sep = "\t") | |
| 23 write.table(Out,file=outputfile,quote=F,col.names=NA,row.names=T,sep = "\t") ##cms - changed on 11/11/13 | |
| 24 |