Mercurial > repos > yating-l > ucsc_blat

annotate README.rst @ 20:181a8b8ac4da draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit 8860b60c42ac23449ba327bbe96d2ac667770268-dirty
author yating-l
date Thu, 18 May 2017 12:35:06 -0400
parents 3511cb739854
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
5
70d7377d5e24 planemo upload commit 7856c637db5bd4ea0b8b4db63e242618421a9cc6-dirty
yating-l
parents:
diff changeset
1 Galaxy wrapper for UCSC BLAT alignment tool
70d7377d5e24 planemo upload commit 7856c637db5bd4ea0b8b4db63e242618421a9cc6-dirty
yating-l
parents:
diff changeset
2 ===========================================
70d7377d5e24 planemo upload commit 7856c637db5bd4ea0b8b4db63e242618421a9cc6-dirty
yating-l
parents:
diff changeset
3 BLAT (http://genome.ucsc.edu/goldenPath/help/blatSpec.html) is a bioinformatics software a tool which performs rapid mRNA/DNA and cross-species protein alignments.
70d7377d5e24 planemo upload commit 7856c637db5bd4ea0b8b4db63e242618421a9cc6-dirty
yating-l
parents:
diff changeset
4
70d7377d5e24 planemo upload commit 7856c637db5bd4ea0b8b4db63e242618421a9cc6-dirty
yating-l
parents:
diff changeset
5 Features
70d7377d5e24 planemo upload commit 7856c637db5bd4ea0b8b4db63e242618421a9cc6-dirty
yating-l
parents:
diff changeset
6 --------
70d7377d5e24 planemo upload commit 7856c637db5bd4ea0b8b4db63e242618421a9cc6-dirty
yating-l
parents:
diff changeset
7 1. Perform rapid mRNA/DNA and cross-species protein alignments using blat
70d7377d5e24 planemo upload commit 7856c637db5bd4ea0b8b4db63e242618421a9cc6-dirty
yating-l
parents:
diff changeset
8 2. Sort the output file
10
3511cb739854 planemo upload commit 98f55adc515e51ba5c71a0135a620f3e1fcca9b9
yating-l
parents: 5
diff changeset
9 3. The output file can be filtered using UCSC pslCDnaFilter
5
70d7377d5e24 planemo upload commit 7856c637db5bd4ea0b8b4db63e242618421a9cc6-dirty
yating-l
parents:
diff changeset
10
70d7377d5e24 planemo upload commit 7856c637db5bd4ea0b8b4db63e242618421a9cc6-dirty
yating-l
parents:
diff changeset
11 Licence
70d7377d5e24 planemo upload commit 7856c637db5bd4ea0b8b4db63e242618421a9cc6-dirty
yating-l
parents:
diff changeset
12 -------
70d7377d5e24 planemo upload commit 7856c637db5bd4ea0b8b4db63e242618421a9cc6-dirty
yating-l
parents:
diff changeset
13 Please note that commercial download and installation of the Blat and In-Silico PCR software may be licensed through Kent Informatics (http://www.kentinformatics.com).
70d7377d5e24 planemo upload commit 7856c637db5bd4ea0b8b4db63e242618421a9cc6-dirty
yating-l
parents:
diff changeset
14