# HG changeset patch
# User yating-l
# Date 1494969469 14400
# Node ID 8b01334aa716d6b26b7f83f32f5add2dda3c9f18
planemo upload commit f3d1aff651695e9b68dd99ee51e8f5c73ee2bc39
diff -r 000000000000 -r 8b01334aa716 test-data/contigs.2bit
Binary file test-data/contigs.2bit has changed
diff -r 000000000000 -r 8b01334aa716 test-data/contigs_cytoband.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/contigs_cytoband.bed Tue May 16 17:17:49 2017 -0400
@@ -0,0 +1,2 @@
+contig10 0 43013 contig10 gneg
+contig12 0 56019 contig12 gneg
diff -r 000000000000 -r 8b01334aa716 tool_dependencies.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml Tue May 16 17:17:49 2017 -0400
@@ -0,0 +1,6 @@
+
+
+
+
+
+
diff -r 000000000000 -r 8b01334aa716 twobit_to_cytoband.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/twobit_to_cytoband.xml Tue May 16 17:17:49 2017 -0400
@@ -0,0 +1,45 @@
+
+
+ Creates a cytoband file from a twoBit file
+
+
+ ucsc_macros.xml
+
+
+
+
+
+ "${bed_output}"
+]]>
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+`_
+from a twoBit file to enable quicker navigation of individual scaffolds
+in the UCSC Genome Browser.
+
+ ]]>
+
+
+
diff -r 000000000000 -r 8b01334aa716 ucsc_macros.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/ucsc_macros.xml Tue May 16 17:17:49 2017 -0400
@@ -0,0 +1,44 @@
+
+
+
+ ucsc_twobit
+
+
+
+
+
+
+ C
+
+
+
+
+
+
+ @article{Kent01062002,
+author = {Kent, W. James and Sugnet, Charles W. and Furey, Terrence S. and Roskin, Krishna M. and Pringle, Tom H. and Zahler, Alan M. and Haussler, and David},
+title = {The Human Genome Browser at UCSC},
+volume = {12},
+number = {6},
+pages = {996-1006},
+year = {2002},
+doi = {10.1101/gr.229102},
+URL = {http://genome.cshlp.org/content/12/6/996.abstract},
+eprint = {http://genome.cshlp.org/content/12/6/996.full.pdf+html},
+journal = {Genome Research}
+}
+
+
+
+
+
+
+
+
+