Mercurial > repos > yating-l > suite_gonramp_apollo2

diff tool_dependencies.xml @ 0:9945eba268e6 draft default tip

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planemo upload for repository https://github.com/Yating-L/suite_gonramp_apollo.git commit 9009fa8663038d2cb4a1c5130600a51f31f654a1-dirty
author yating-l
date Mon, 27 Nov 2017 12:49:27 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Nov 27 12:49:27 2017 -0500
@@ -0,0 +1,23 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    
+    <package name="apollo_api" version="3.0.3">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">https://github.com/galaxy-genome-annotation/python-apollo/archive/3.0.3.tar.gz</action>
+                <action type="make_directory">$INSTALL_DIR/apollo</action>
+                <action type="shell_command">
+                    export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/apollo &amp;&amp; 
+                    python setup.py install --install-lib $INSTALL_DIR/apollo
+                </action>
+                <action type="set_environment">
+                    <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/apollo</environment_variable>
+                    <environment_variable action="append_to" name="PATH">$INSTALL_DIR/apollo</environment_variable>
+                </action>
+            </actions>
+        </install>
+    </package>
+
+
+    
+</tool_dependency>