Mercurial > repos > yating-l > regtools_junctions_extract
diff README.md @ 2:cf258ca024ff draft
planemo upload commit ca69686dfafcabb815c93fd46d3c4dfe57459e39-dirty
| author | yating-l |
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| date | Mon, 19 Dec 2016 14:49:37 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README.md Mon Dec 19 14:49:37 2016 -0500 @@ -0,0 +1,6 @@ +# regtools +A Galaxy Wrapper for regtools + +This is a modified Galaxy wrapper for regtools which is based on the previous wrapper written by Remi Marenco (https://github.com/remimarenco/regtools). "regtools is a set of tools that integrate DNA-seq and RNA-seq data to help interpret mutations in a regulatory and splicing context" (https://regtools.readthedocs.io/en/latest/). + +This wrapper add an validation step to check if the output files are valid BED format. The lines with invalid strand (neighter "+" or "-") will be removed. The scores higher than 1000 will be changed to 1000. All modified lines will be reported to the standard output.