Mercurial > repos > yating-l > regtools_junctions_extract

diff tool_dependencies.xml @ 0:2626c5b4c665 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit db634d933827ebc78981c7a0aa18205a85fa42e6-dirty
author yating-l
date Mon, 19 Dec 2016 13:07:32 -0500
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Dec 19 13:07:32 2016 -0500
@@ -0,0 +1,28 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="regtools" version="0.3.0">
+        <install version="1.0">
+            <actions>
+                <action type="shell_command">git clone --recursive https://github.com/griffithlab/regtools.git</action>
+                <action type="make_directory">build</action>
+                <action type="change_directory">build</action>
+
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="2da7b99cb1a1" name="package_cmake_3_2_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="cmake" version="3.2.3" />
+                    </repository>
+                </action>
+                <action type="shell_command">cmake ..</action>
+
+                <action type="shell_command">make</action>
+                <action type="move_file">
+                    <source>regtools</source>
+                    <destination>$INSTALL_DIR</destination>
+                </action>
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions>
+        </install>
+    </package>
+</tool_dependency>