Mercurial > repos > yating-l > psltobigpsl

annotate psltobigpsl.xml @ 2:eb357d8580c5 draft

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planemo upload for repository https://github.com/Yating-L/psltobigpsl.git commit ff5c69b4993f12c98849dd274511d7866b889713-dirty
author yating-l
date Fri, 30 Dec 2016 17:41:50 -0500
parents 107373c01472
children beb6e2ef1b45
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1 <tool id="pslToBigPsl" name="pslToBigPsl" version="0.1.0">
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2 <requirements>
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3 <!-- Requires Conda -->
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4 <requirement type="package" version="0.1.0">psltoBigPsl</requirement>
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5 </requirements>
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6 <stdio>
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7 <exit_code range="1:" />
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8 </stdio>
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9 <command><![CDATA[
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10 $__tool_directory__/pslToBigPsl $input stdout | sort -k1,1 -k2,2n > $output
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11 ]]></command>
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12 <inputs>
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13 <param name="input" label="Psl file" type="data" format="psl" />
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14 </inputs>
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15 <outputs>
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16 <data name="output" format="bed" />
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17 </outputs>
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18 <help><![CDATA[
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19 Transform a Psl format file to a Bed format file.
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20 Input: Psl File
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21 Ouput: BigPsl File
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22 ]]></help>
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23 </tool>