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changeset 0:e197661910fb draft default tip

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planemo upload commit 19a71183895f05c4b532bcd5fc60df7322c4f07c-dirty
author yating-l
date Wed, 28 Dec 2016 12:30:14 -0500
parents
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files README.md pslToBed.xml
diffstat 2 files changed, 30 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/README.md	Wed Dec 28 12:30:14 2016 -0500
@@ -0,0 +1,4 @@
+Galaxy wrapper for pslToBed
+---------------------------
+
+pslToBed: transform a psl format file to a bed format file.
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/pslToBed.xml	Wed Dec 28 12:30:14 2016 -0500
@@ -0,0 +1,26 @@
+<tool id="pslToBed" name="pslToBed" version="0.1.0">
+    <requirements>
+        <!-- Requires Conda -->
+        <requirement type="package" version="324">ucsc-psltobed</requirement>
+    </requirements>
+    <stdio>
+        <exit_code range="1:" />
+    </stdio>
+    <command><![CDATA[
+        pslToBed $input $output
+    ]]></command>
+    <inputs>
+        <param name="input" label="Psl file" type="data" format="psl" />
+    </inputs>
+    <outputs>
+        <data name="output" format="bed" />
+    </outputs>
+    <help><![CDATA[
+        Transform a Psl format file to a Bed format file.
+
+
+        Input: Psl File
+
+        Ouput: Bed File
+    ]]></help>
+</tool>
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