Mercurial > repos > yating-l > package_ucsc_twobit_340

view tool_dependencies.xml @ 1:5821ea743daf draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
author yating-l
date Wed, 17 May 2017 12:40:14 -0400
parents 2b2793470ce4
children bb4b375e0dfc
line wrap: on
line source

<?xml version="1.0" ?>
<tool_dependency>
    <package name="ucsc_hac" version="340">
        <install version="1.0">
            <actions_group>
                <actions architecture="x86_64" os="linux">
                    <action type="download_by_url">http://old-gep.wustl.edu/~galaxy/ucsc_tools_340.tar.gz</action>
                    <action type="move_directory_files">
                        <source_directory>.</source_directory>
                        <destination_directory>$INSTALL_DIR/bin</destination_directory>
                    </action>
                </actions>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions_group>
         </install>
         <readme>The well known UCSC tools from Jim Kent. This subset of UCSC tools are used for HubArchiveCreator, including 
         - bedGraphToBigWig
         - bedToBigBed
         - gff3ToGenePred
         - gtfToGenePred
         - genePredToBed
         - genePredToBigGenePred
         - faToTwoBit
         - pslToBigPsl
         </readme>
    </package>
</tool_dependency>