Mercurial > repos > yating-l > multi_fasta_glimmer_hmm
changeset 6:28445006bf32 draft
planemo upload for repository https://github.com/remimarenco/multi_fasta_glimmerhmm.git commit 5594d470c65c83b5b620681db44b1975bd218581-dirty
| author | yating-l |
|---|---|
| date | Mon, 01 May 2017 17:39:29 -0400 |
| parents | ae6d9fb99326 |
| children | 0f39f40ef695 |
| files | glimmer_hmm.loc.sample tool_dependencies.xml |
| diffstat | 2 files changed, 10 insertions(+), 9 deletions(-) [+] |
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--- a/glimmer_hmm.loc.sample Mon May 01 15:21:44 2017 -0400 +++ b/glimmer_hmm.loc.sample Mon May 01 17:39:29 2017 -0400 @@ -8,9 +8,9 @@ # #glimmer_hmm.loc could look something like this: # -#human Human /path/to/trained_dir/human -#celegans Celegan /path/to/trained_dir/Celegans -#arabidopsis Arabidopsis /path/to/trained_dir/arabidopsis -#rice Rice /path/to/trained_dir/rice -#zebrafish Zebrafish /path/to/trained_dir/zebrafish +#human Human /path/to/trained_dir/human +#celegans Celegan /path/to/trained_dir/Celegans +#arabidopsis Arabidopsis /path/to/trained_dir/arabidopsis +#rice Rice /path/to/trained_dir/rice +#zebrafish Zebrafish /path/to/trained_dir/zebrafish #
--- a/tool_dependencies.xml Mon May 01 15:21:44 2017 -0400 +++ b/tool_dependencies.xml Mon May 01 17:39:29 2017 -0400 @@ -8,13 +8,14 @@ <action type="move_directory_files"> <source_directory>.</source_directory> <destination_directory>$INSTALL_DIR</destination_directory> - </action> + </action> + <action type="move_file" rename_to="glimmerhmm"> + <source>$INSTALL_DIR/bin/glimmerhmm_linux_x86_64</source> + <destination>$INSTALL_DIR/bin</destination> + </action> <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> </action> - <action type="shell_command"> - mv $INSTALL_DIR/bin/glimmerhmm_linux_x86_64 $INSTALL_DIR/bin/glimmerhmm - </action> </actions> </actions_group> </install>