Mercurial > repos > yating-l > jbrowsearchivecreator

changeset 7:ef3a3904007d draft

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planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit d583ac16a6c6942730ea536eb59cc37941816030-dirty
author yating-l
date Fri, 19 May 2017 12:12:53 -0400
parents f9760de55888
children 3be453a69e70
files tool_dependencies.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Fri May 19 11:26:30 2017 -0400
+++ b/tool_dependencies.xml	Fri May 19 12:12:53 2017 -0400
@@ -71,8 +71,8 @@
                 <actions architecture="x86_64" os="linux">
                     <action type="download_by_url">http://jbrowse.org/wordpress/wp-content/plugins/download-monitor/download.php?id=105</action>
                     <action type="make_directory">$INSTALL_DIR/jbrowse</action>
-                    <action type="shell_command">
-                        if [ -d "$TMP_WORK_DIR" ] ; then export HOME=$TMP_WORK_DIR ; else export HOME=`mktemp -d` ; fi ; 
+                    <action type="set_environment">
+                        <environment_variable action="set_to" name="HOME">$INSTALL_DIR/jbrowse</environment_variable>
                     </action>
                     <action type="shell_command">
                         ./setup.sh