Mercurial > repos > yating-l > jbrowsearchivecreator

diff datatypes/Datatype.py @ 38:d17f629f5486 draft

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planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit e4c1d387db160a3bf4a1e8abc288bdffbbbe2818-dirty
author yating-l
date Fri, 06 Apr 2018 13:44:56 -0400
parents 31a41ce128cc
children 4a69515eed63
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line diff
--- a/datatypes/Datatype.py	Thu Feb 15 16:54:36 2018 -0500
+++ b/datatypes/Datatype.py	Fri Apr 06 13:44:56 2018 -0400
@@ -53,13 +53,14 @@
 
     @staticmethod
     def pre_init(reference_genome, chrom_sizes_file,
-                 extra_files_path, tool_directory, specie_folder, tracks_folder, binary_folder, track_type):
+                 extra_files_path, tool_directory, specie_folder, tracks_folder, final_tracks_folder, binary_folder, track_type):
         Datatype.extra_files_path = extra_files_path
         Datatype.tool_directory = tool_directory
 
         # TODO: All this should be in TrackHub and not in Datatype
         Datatype.mySpecieFolderPath = specie_folder
-        Datatype.myTrackFolderPath = tracks_folder
+        Datatype.myTrackFolderPath = tracks_folder  # temporary raw data files
+        Datatype.myFinalTrackFolderPath = final_tracks_folder # final tracks folder
         Datatype.myBinaryFolderPath = binary_folder
 
         Datatype.input_fasta_file = reference_genome